myRT

myRT report for GCA_003319235.1_ASM331923v1

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Seq: CP030861.1 Pseudomonas aeruginosa strain HS9 chromosome, complete genome (6876988 bp)
Overview 1 RT 1: 1410093-1417017 bp 2 RT 2: 1877452-1885634 bp 3 RT 3: 1901899-1912193 bp Neighborhood of RT #1 [1410093, 1417100] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #2 [1877452, 1885642] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #3 [1901899, 1912204] PRK05658 PBP2_BvgS_HisK_like RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 1410093-1411637 bp Ori: AXC19755.1 Feature: domain Description: CHD Location: 1410309-1410723 bp Feature: domain Description: CHD Location: 1 41 0309-1 41 0723 bp Feature: domain Description: CHD Location: 1410951-1411440 bp Feature: domain Description: CHD Location: 1 41 0951 -1 41 1 440 bp Feature: gene Location: 1413156-1413482 bp Feature: gene Location: 1413632-1414900 bp Ori: AXC19756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413845-1414502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 3845-1 41 4502 bp Feature: domain Description: GIIM Note: maturase Location: 1414580-1414802 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 4580-1 41 4802 bp Feature: gene Location: 1415420-1415930 bp Feature: domain Description: DUF772 Location: 1415570-1415765 bp Feature: domain Description: DUF772 Location: 1 41 5570-1 41 5765 bp Feature: gene Location: 1416273-1417100 bp Ori: AXC19757.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 1416303-1417017 bp Feature: domain Description: ABC_phnC Location: 1 41 6303-1 41 701 7 bp Feature: gene Location: 1877452-1878468 bp Ori: AXC20196.1 Feature: domain Description: COG3178 Location: 1877455-1878454 bp Feature: domain Description: COG31 78 Location: 1 877455-1 878454 bp Feature: gene Location: 1879341-1879553 bp Feature: gene Location: 1879741-1881453 bp Ori: AXC20197.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1879798-1880041 bp Feature: domain Description: RVT_N Location: 1 879798-1 880041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880086-1880722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 880086-1 880722 bp Feature: domain Description: YkfC Location: 1880929-1881082 bp Feature: domain Description: YkfC Location: 1 880929-1 881 082 bp Feature: domain Description: HNH Note: nucleases Location: 1881259-1881397 bp Feature: domain Description: HNH Note: nucleases Location: 1 881 259-1 881 397 bp Feature: gene Location: 1881586-1884369 bp Ori: AXC20198.1 Feature: domain Description: LptD Location: 1881781-1884355 bp Feature: domain Description: LptD Location: 1 881 781 -1 884355 bp Feature: gene Location: 1884350-1885642 bp Ori: AXC20199.1 Feature: domain Description: PRK10770 Location: 1884440-1885634 bp Feature: domain Description: PRK1 0770 Location: 1 884440-1 885634 bp Feature: gene Location: 1901899-1903752 bp Ori: AXC20217.1 Feature: domain Description: PRK05658 Location: 1901911-1903750 bp Feature: domain Description: PRK05658 Location: 1 901 91 1 -1 903750 bp Feature: gene Location: 1903859-1907595 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1903967-1904612 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 903967-1 90461 2 bp Feature: gene Location: 1908675-1910360 bp Ori: AXC20218.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1908732-1908972 bp Feature: domain Description: RVT_N Location: 1 908732-1 908972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1909020-1909656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 909020-1 909656 bp Feature: domain Description: GIIM Note: maturase Location: 1909710-1909941 bp Feature: domain Description: GIIM Note: maturase Location: 1 90971 0-1 909941 bp Feature: domain Description: HNH Note: nucleases Location: 1910193-1910331 bp Feature: domain Description: HNH Note: nucleases Location: 1 91 01 93-1 91 0331 bp Feature: gene Location: 1910663-1910824 bp Feature: gene Location: 1911083-1912204 bp Ori: AXC20220.1 Feature: domain Description: COG3177 Location: 1911101-1912193 bp Feature: domain Description: COG31 77 Location: 1 91 1 1 01 -1 91 21 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844), LptD (COG1452)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), COG3177 (Fic family protein )