myRT

myRT report for GCA_003330745.1_ASM333074v1

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Seq: CP024905.1 Paraburkholderia caledonica strain PHRS4 chromosome PHRS4_A, complete sequence (3862683 bp)
Overview 1 RT 1: 1859653-1865518 bp 2 RT 2: 3379269-3386927 bp Neighborhood of RT #1 [1859653, 1865544] HpnJ RVT-GII GIIM PRK06370 Neighborhood of RT #2 [3379269, 3387088] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA Feature: gene Location: 1859653-1859994 bp Feature: gene Location: 1860434-1861855 bp Ori: AXF14388.1 Gene: hpnJ Feature: domain Description: HpnJ Location: 1860437-1861850 bp Feature: domain Description: HpnJ Location: 1 860437-1 861 850 bp Feature: gene Location: 1862090-1863400 bp Ori: AXF14389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1862381-1863044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 862381 -1 863044 bp Feature: domain Description: GIIM Note: maturase Location: 1863113-1863329 bp Feature: domain Description: GIIM Note: maturase Location: 1 8631 1 3-1 863329 bp Feature: gene Location: 1863415-1863646 bp Feature: gene Location: 1864159-1865544 bp Ori: AXF14390.1 Feature: domain Description: PRK06370 Location: 1864174-1865518 bp Feature: domain Description: PRK06370 Location: 1 8641 74-1 86551 8 bp Feature: gene Location: 3379269-3380510 bp Ori: AXF15554.1 Gene: argJ Feature: domain Description: argJ Location: 3379308-3380508 bp Feature: domain Description: argJ Location: 3379308-3380508 bp Feature: gene Location: 3380675-3383485 bp Ori: AXF15555.1 Feature: domain Description: PRK12904 Location: 3380687-3383477 bp Feature: domain Description: PRK1 2904 Location: 3380687-3383477 bp Feature: gene Location: 3383688-3385388 bp Ori: AXF15556.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3383745-3383988 bp Feature: domain Description: RVT_N Location: 3383745-3383988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3384033-3384681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3384033-3384681 bp Feature: domain Description: GIIM Note: maturase Location: 3384735-3384966 bp Feature: domain Description: GIIM Note: maturase Location: 3384735-3384966 bp Feature: domain Description: HNHc Note: nucleases Location: 3385182-3385350 bp Feature: domain Description: HNHc Note: nucleases Location: 33851 82-3385350 bp Feature: gene Location: 3385475-3385711 bp Feature: gene Location: 3386603-3387088 bp Ori: AXF15558.1 Feature: domain Description: DciA Location: 3386672-3386927 bp Feature: domain Description: DciA Location: 3386672-3386927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HpnJ (TIGR03471), RVT-GII, GIIM (pfam08388), PRK06370 (FAD-containing oxidoreductase), argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), HNHc (smart00507), DciA

Seq: CP024907.1 Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence (403765 bp)
Overview 1 RT 1: 38269-43450 bp 2 RT 2: 305793-311256 bp Neighborhood of RT #1 [38269, 43458] RVT-GII GIIM HTH_38 Tra8 Neighborhood of RT #2 [305793, 311256] PBP1_ABC_LIVBP_like DapA RVT-GII Feature: gene Location: 38269-38694 bp Feature: gene Location: 38842-39264 bp Feature: gene Location: 39850-41118 bp Ori: AXF19048.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40099-40762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40099-40762 bp Feature: domain Description: GIIM Note: maturase Location: 40831-41047 bp Feature: domain Description: GIIM Note: maturase Location: 40831-41047 bp Feature: gene Location: 41175-41406 bp Feature: gene Location: 42298-43458 bp Ori: AXF18778.1 Feature: domain Description: HTH_38 Location: 42361-42421 bp Feature: domain Description: HTH_38 Location: 42 361-42 42 1 bp Feature: domain Description: Tra8 Location: 42484-43450 bp Feature: domain Description: Tra8 Location: 42 484-43450 bp Feature: gene Location: 305793-306944 bp Ori: AXF18982.1 Feature: domain Description: PBP1_ABC_LIVBP_like Location: 305892-306900 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 305892 -306900 bp Feature: gene Location: 307254-308198 bp Ori: AXF18983.1 Feature: domain Description: DapA Location: 307266-308139 bp Feature: domain Description: DapA Location: 3072 66-308139 bp Feature: gene Location: 308369-309136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308525-308939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30852 5-308939 bp Feature: gene Location: 309279-309604 bp Feature: gene Location: 309816-311256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), PBP1_ABC_LIVBP_like, DapA (COG0329)