myRT

myRT report for GCA_003330785.1_ASM333078v1

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Seq: CP024934.1 Paraburkholderia graminis strain PHS1 chromosome PHS1_A, complete sequence (4031601 bp)
Overview 1 RT 1: 446067-451262 bp 2 RT 2: 933182-937936 bp 3 RT 3: 1367754-1372102 bp 4 RT 4: 3506889-3514535 bp Neighborhood of RT #1 [446067, 451306] PRK06958 RVT-GII GIIM PRK15041 Neighborhood of RT #2 [933182, 937971] ugpC RVT-GII GIIM HTH_1 PBP2_CrgA_like_3 GstA Neighborhood of RT #3 [1367754, 1372164] PRK14997 RVT-GII GIIM ExbD TolQ Neighborhood of RT #4 [3506889, 3514696] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA Feature: gene Location: 446067-446621 bp Ori: AXF06809.1 Feature: domain Description: PRK06958 Location: 446070-446619 bp Feature: domain Description: PRK06958 Location: 446070-44661 9 bp Feature: gene Location: 446705-447022 bp Feature: gene Location: 447078-448448 bp Ori: AXF06810.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447414-448029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44741 4-448029 bp Feature: domain Description: GIIM Note: maturase Location: 448089-448296 bp Feature: domain Description: GIIM Note: maturase Location: 448089-448296 bp Feature: gene Location: 448545-449345 bp Feature: gene Location: 449648-451306 bp Ori: AXF06811.1 Feature: domain Description: PRK15041 Location: 449651-451262 bp Feature: domain Description: PRK1 5041 Location: 449651 -451 262 bp Feature: gene Location: 933182-934297 bp Ori: AXF07186.1 Feature: domain Description: ugpC Location: 933185-934292 bp Feature: domain Description: ugpC Location: 9331 85-934292 bp Feature: gene Location: 934400-934717 bp Feature: gene Location: 934773-936143 bp Ori: AXF07187.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935109-935724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9351 09-935724 bp Feature: domain Description: GIIM Note: maturase Location: 935784-935991 bp Feature: domain Description: GIIM Note: maturase Location: 935784-935991 bp Feature: gene Location: 936255-937172 bp Ori: AXF07188.1 Feature: domain Description: HTH_1 Location: 936270-936441 bp Feature: domain Description: HTH_1 Location: 936270-936441 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 936531-937131 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 936531 -9371 31 bp Feature: gene Location: 937312-937971 bp Ori: AXF07189.1 Feature: domain Description: GstA Location: 937321-937936 bp Feature: domain Description: GstA Location: 937321 -937936 bp Feature: gene Location: 1367754-1368740 bp Ori: AXF07566.1 Feature: domain Description: PRK14997 Location: 1367775-1368645 bp Feature: domain Description: PRK1 4997 Location: 1 367775-1 368645 bp Feature: gene Location: 1369061-1369390 bp Feature: gene Location: 1369461-1370831 bp Ori: AXF07567.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369797-1370412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 369797-1 37041 2 bp Feature: domain Description: GIIM Note: maturase Location: 1370472-1370679 bp Feature: domain Description: GIIM Note: maturase Location: 1 370472-1 370679 bp Feature: gene Location: 1370991-1371410 bp Ori: AXF07568.1 Feature: domain Description: ExbD Location: 1371018-1371402 bp Feature: domain Description: ExbD Location: 1 371 01 8-1 371 402 bp Feature: gene Location: 1371436-1372164 bp Ori: AXF07569.1 Feature: domain Description: TolQ Location: 1371469-1372102 bp Feature: domain Description: TolQ Location: 1 371 469-1 3721 02 bp Feature: gene Location: 3506889-3508130 bp Ori: AXF09192.1 Gene: argJ Feature: domain Description: argJ Location: 3506928-3508128 bp Feature: domain Description: argJ Location: 3506928-35081 28 bp Feature: gene Location: 3508281-3511091 bp Ori: AXF09193.1 Feature: domain Description: PRK12904 Location: 3508293-3511083 bp Feature: domain Description: PRK1 2904 Location: 3508293-351 1 083 bp Feature: gene Location: 3511294-3512994 bp Ori: AXF09930.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3511351-3511594 bp Feature: domain Description: RVT_N Location: 351 1 351 -351 1 594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3511639-3512287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 1 639-351 2287 bp Feature: domain Description: GIIM Note: maturase Location: 3512341-3512572 bp Feature: domain Description: GIIM Note: maturase Location: 351 2341 -351 2572 bp Feature: domain Description: HNHc Note: nucleases Location: 3512788-3512956 bp Feature: domain Description: HNHc Note: nucleases Location: 351 2788-351 2956 bp Feature: gene Location: 3513094-3513384 bp Feature: gene Location: 3514211-3514696 bp Ori: AXF09195.1 Feature: domain Description: DciA Location: 3514280-3514535 bp Feature: domain Description: DciA Location: 351 4280-351 4535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06958 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), PRK15041 (methyl-accepting chemotaxis protein), ugpC (PRK11650), HTH_1 (pfam00126), PBP2_CrgA_like_3 (cd08472), GstA (COG0625), PRK14997 (LysR family transcriptional regulator; Provisional), ExbD (pfam02472)
TolQ (COG0811), argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), HNHc (smart00507), DciA

Seq: CP024935.1 Paraburkholderia graminis strain PHS1 chromosome PHS1_B, complete sequence (2982346 bp)
Overview 1 RT 1: 1720642-1726392 bp Neighborhood of RT #1 [1720642, 1726481] 2A0114 FadR RVT-GII GIIM ALDH_KGSADH Feature: gene Location: 1720642-1721991 bp Ori: AXF11291.1 Feature: domain Description: 2A0114 Location: 1720729-1721956 bp Feature: domain Description: 2 A0114 Location: 172 072 9-172 1956 bp Feature: gene Location: 1722158-1722901 bp Ori: AXF11292.1 Feature: domain Description: FadR Location: 1722188-1722890 bp Feature: domain Description: FadR Location: 172 2 188-172 2 890 bp Feature: gene Location: 1723038-1724408 bp Ori: AXF11293.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1723374-1723989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 3374-172 3989 bp Feature: domain Description: GIIM Note: maturase Location: 1724049-1724256 bp Feature: domain Description: GIIM Note: maturase Location: 172 4049-172 42 56 bp Feature: gene Location: 1724464-1724781 bp Feature: gene Location: 1724874-1726481 bp Ori: AXF11294.1 Feature: domain Description: ALDH_KGSADH Location: 1725036-1726392 bp Feature: domain Description: ALDH_KGSADH Location: 172 5036-172 6392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0114 (TIGR00893), FadR (COG2186), RVT-GII, GIIM (pfam08388), ALDH_KGSADH (cd07129)

Seq: CP024936.1 Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence (494503 bp)
Overview 1 RT 1: 205978-210342 bp Neighborhood of RT #1 [205978, 210386] TnpB_IS66 COG3666 DDE_Tnp_1_6 RVT-GII GIIM trp_arylform Feature: gene Location: 205978-206169 bp Ori: AXF12697.1 Feature: domain Description: TnpB_IS66 Location: 206005-206131 bp Feature: domain Description: TnpB_IS66 Location: 206005-20613 1 bp Feature: gene Location: 206592-207992 bp Feature: domain Description: COG3666 Location: 206604-207078 bp Feature: domain Description: COG3 666 Location: 206604-207078 bp Feature: domain Description: DDE_Tnp_1_6 Location: 207636-207984 bp Feature: domain Description: DDE_Tnp_1_6 Location: 20763 6-207984 bp Feature: gene Location: 208489-209757 bp Ori: AXF12959.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208738-209401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20873 8-209401 bp Feature: domain Description: GIIM Note: maturase Location: 209470-209686 bp Feature: domain Description: GIIM Note: maturase Location: 209470-209686 bp Feature: gene Location: 209814-210045 bp Feature: gene Location: 210207-210386 bp Feature: domain Description: trp_arylform Location: 210213-210342 bp Feature: domain Description: trp_arylform Location: 210213 -2103 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), trp_arylform (TIGR03035)