myRT

myRT report for GCA_003330805.1_ASM333080v1

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Seq: CP024940.1 Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence (1235162 bp)
Overview 1 RT 1: 560680-568831 bp 2 RT 2: 786379-790485 bp 3 RT 3: 1052987-1058570 bp 4 RT 4: 1092078-1098994 bp Neighborhood of RT #1 [560680, 568866] PRK15479 gram_neg_porins RVT-GII GIIM RVT-GII GIIM citrate_synt_like_2 VOC Neighborhood of RT #2 [786379, 790508] RhtB RVT-GII GIIM KOG1080 Neighborhood of RT #3 [1052987, 1058629] RES RVT-UG7 DUF3422 Neighborhood of RT #4 [1092078, 1099062] AraJ ALDH_DhaS RVT-GII GIIM MmsB MmsB Feature: gene Location: 560680-561354 bp Ori: AXF05831.1 Feature: domain Description: PRK15479 Location: 560683-561343 bp Feature: domain Description: PRK1 5479 Location: 560683-561 343 bp Feature: gene Location: 561549-562676 bp Ori: AXF05832.1 Feature: domain Description: gram_neg_porins Location: 561621-562674 bp Feature: domain Description: gram_neg_porins Location: 561 621 -562674 bp Feature: gene Location: 563746-565050 bp Ori: AXF05833.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564037-564646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564037-564646 bp Feature: domain Description: GIIM Note: maturase Location: 564742-564952 bp Feature: domain Description: GIIM Note: maturase Location: 564742-564952 bp Feature: gene Location: 565193-566572 bp Ori: AXF05834.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565520-566141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565520-5661 41 bp Feature: domain Description: GIIM Note: maturase Location: 566192-566402 bp Feature: domain Description: GIIM Note: maturase Location: 5661 92-566402 bp Feature: gene Location: 567125-568369 bp Ori: AXF05835.1 Feature: domain Description: citrate_synt_like_2 Location: 567302-568262 bp Feature: domain Description: citrate_synt_like_2 Location: 567302-568262 bp Feature: gene Location: 568474-568866 bp Ori: AXF05836.1 Feature: domain Description: VOC Location: 568498-568831 bp Feature: domain Description: VOC Location: 568498-568831 bp Feature: gene Location: 786379-786633 bp Feature: gene Location: 786948-787580 bp Ori: AXF05999.1 Feature: domain Description: RhtB Location: 786951-787572 bp Feature: domain Description: RhtB Location: 786951 -787572 bp Feature: gene Location: 788497-789750 bp Ori: AXF06000.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788710-789367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78871 0-789367 bp Feature: domain Description: GIIM Note: maturase Location: 789445-789679 bp Feature: domain Description: GIIM Note: maturase Location: 789445-789679 bp Feature: gene Location: 789761-789970 bp Feature: gene Location: 790050-790508 bp Ori: AXF06002.1 Feature: domain Description: KOG1080 Location: 790062-790485 bp Feature: domain Description: KOG1 080 Location: 790062-790485 bp Feature: gene Location: 1052987-1053670 bp Feature: gene Location: 1053844-1054398 bp Ori: AXF06189.1 Feature: domain Description: RES Location: 1053916-1054261 bp Feature: domain Description: RES Location: 1 05391 6-1 054261 bp Feature: gene Location: 1054784-1056424 bp Ori: AXF06190.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1055237-1055621 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 055237-1 055621 bp Feature: gene Location: 1056405-1057133 bp Feature: gene Location: 1057319-1058629 bp Ori: AXF06443.1 Feature: domain Description: DUF3422 Location: 1057328-1058570 bp Feature: domain Description: DUF3422 Location: 1 057328-1 058570 bp Feature: gene Location: 1092078-1093265 bp Ori: AXF06215.1 Feature: domain Description: AraJ Location: 1092117-1093251 bp Feature: domain Description: AraJ Location: 1 0921 1 7-1 093251 bp Feature: gene Location: 1093568-1095049 bp Ori: AXF06216.1 Feature: domain Description: ALDH_DhaS Location: 1093640-1095002 bp Feature: domain Description: ALDH_DhaS Location: 1 093640-1 095002 bp Feature: gene Location: 1095563-1096942 bp Ori: AXF06217.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1095890-1096511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 095890-1 09651 1 bp Feature: domain Description: GIIM Note: maturase Location: 1096562-1096772 bp Feature: domain Description: GIIM Note: maturase Location: 1 096562-1 096772 bp Feature: gene Location: 1097267-1098184 bp Ori: AXF06218.1 Feature: domain Description: MmsB Location: 1097270-1098062 bp Feature: domain Description: MmsB Location: 1 097270-1 098062 bp Feature: gene Location: 1098181-1099062 bp Ori: AXF06219.1 Feature: domain Description: MmsB Location: 1098190-1098994 bp Feature: domain Description: MmsB Location: 1 0981 90-1 098994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15479 (transcriptional regulator TctD), gram_neg_porins (cd00342), RVT-GII, GIIM (pfam08388), citrate_synt_like_2 (cd06102), VOC (cl14632), RhtB (COG1280), KOG1080 (KOG1080, Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases ), RES (smart00953), RVT-UG7
DUF3422 (pfam11902), AraJ (COG2814), ALDH_DhaS (cd07114), MmsB (COG2084)

Seq: CP024937.1 Paraburkholderia hospita strain mHSR1 chromosome mHSR1_A, complete sequence (3883124 bp)
Overview 1 RT 1: 351527-360746 bp 2 RT 2: 441577-447961 bp 3 RT 3: 528217-535155 bp 4 RT 4: 1041228-1048334 bp 5 RT 5: 3311893-3319585 bp Neighborhood of RT #1 [351527, 360748] PerM uvrA RVT_N RVT-GII GIIM HNHc MFS_YajR_like PRK06958 Neighborhood of RT #2 [441577, 447996] ubiB TPMT RVT_N RVT-GII GIIM HNHc COG2331 COG2928 Neighborhood of RT #3 [528217, 535160] R_switched_YjbE PilA RVT_N RVT-GII GIIM HNHc PglL_A Wzy_C Wzy_C_2 moaC Neighborhood of RT #4 [1041228, 1048351] EarP RVT_N RVT-GII GIIM HNHc uvrC PRK10832 Neighborhood of RT #5 [3311893, 3319596] Barstar RNase_Sa RVT_N RVT-GII GIIM HNHc PRK12861 PRK05731 Feature: gene Location: 351527-352612 bp Ori: AXE97318.1 Feature: domain Description: PerM Location: 351629-352586 bp Feature: domain Description: PerM Location: 35162 9-352 586 bp Feature: gene Location: 352634-355756 bp Ori: AXE97319.1 Feature: domain Description: uvrA Location: 352640-355487 bp Feature: domain Description: uvrA Location: 352 640-355487 bp Feature: gene Location: 356845-358545 bp Ori: AXE97320.1 Gene: ltrA Feature: domain Description: RVT_N Location: 356902-357145 bp Feature: domain Description: RVT_N Location: 356902 -357145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357190-357838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357190-357838 bp Feature: domain Description: GIIM Note: maturase Location: 357889-358123 bp Feature: domain Description: GIIM Note: maturase Location: 357889-35812 3 bp Feature: domain Description: HNHc Note: nucleases Location: 358354-358507 bp Feature: domain Description: HNHc Note: nucleases Location: 358354-358507 bp Feature: gene Location: 358880-360067 bp Ori: AXE97321.1 Feature: domain Description: MFS_YajR_like Location: 358946-360044 bp Feature: domain Description: MFS_YajR_like Location: 358946-360044 bp Feature: gene Location: 360206-360748 bp Ori: AXE97322.1 Feature: domain Description: PRK06958 Location: 360209-360746 bp Feature: domain Description: PRK06958 Location: 3602 09-360746 bp Feature: gene Location: 441577-443160 bp Ori: AXE97375.1 Feature: domain Description: ubiB Location: 441580-443140 bp Feature: domain Description: ubiB Location: 441580-443140 bp Feature: gene Location: 443183-443830 bp Ori: AXE97376.1 Feature: domain Description: TPMT Location: 443252-443798 bp Feature: domain Description: TPMT Location: 4432 52 -443798 bp Feature: gene Location: 445080-446780 bp Ori: AXE97377.1 Gene: ltrA Feature: domain Description: RVT_N Location: 445137-445380 bp Feature: domain Description: RVT_N Location: 445137-445380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445425-446073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44542 5-446073 bp Feature: domain Description: GIIM Note: maturase Location: 446130-446358 bp Feature: domain Description: GIIM Note: maturase Location: 446130-446358 bp Feature: domain Description: HNHc Note: nucleases Location: 446583-446742 bp Feature: domain Description: HNHc Note: nucleases Location: 446583-446742 bp Feature: gene Location: 446913-447272 bp Ori: AXE97378.1 Feature: domain Description: COG2331 Location: 446916-447135 bp Feature: domain Description: COG2 331 Location: 446916-447135 bp Feature: gene Location: 447340-447996 bp Ori: AXE97379.1 Feature: domain Description: COG2928 Location: 447355-447961 bp Feature: domain Description: COG2 92 8 Location: 447355-447961 bp Feature: gene Location: 528217-528942 bp Ori: AXE97441.1 Feature: domain Description: R_switched_YjbE Location: 528253-528790 bp Feature: domain Description: R_switched_YjbE Location: 52 82 53-52 8790 bp Feature: gene Location: 529082-529699 bp Ori: AXE97442.1 Feature: domain Description: PilA Location: 529196-529427 bp Feature: domain Description: PilA Location: 52 9196-52 942 7 bp Feature: gene Location: 530959-532665 bp Ori: AXE97443.1 Gene: ltrA Feature: domain Description: RVT_N Location: 531016-531259 bp Feature: domain Description: RVT_N Location: 531016-5312 59 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531304-531952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531304-531952 bp Feature: domain Description: GIIM Note: maturase Location: 532003-532237 bp Feature: domain Description: GIIM Note: maturase Location: 532 003-532 2 37 bp Feature: domain Description: HNHc Note: nucleases Location: 532468-532621 bp Feature: domain Description: HNHc Note: nucleases Location: 532 468-532 62 1 bp Feature: gene Location: 532790-534580 bp Ori: AXE97444.1 Feature: domain Description: PglL_A Location: 533297-533369 bp Feature: domain Description: PglL_A Location: 5332 97-533369 bp Feature: domain Description: Wzy_C Location: 533411-533879 bp Feature: domain Description: Wzy_C Location: 533411-533879 bp Feature: domain Description: Wzy_C_2 Location: 533945-534449 bp Feature: domain Description: Wzy_C_2 Location: 533945-534449 bp Feature: gene Location: 534684-535160 bp Ori: AXE97445.1 Gene: moaC Feature: domain Description: moaC Location: 534690-535155 bp Feature: domain Description: moaC Location: 534690-535155 bp Feature: gene Location: 1041228-1042409 bp Ori: AXE97849.1 Feature: domain Description: EarP Location: 1041276-1042392 bp Feature: domain Description: EarP Location: 10412 76-1042 392 bp Feature: gene Location: 1043184-1043372 bp Feature: gene Location: 1043605-1045305 bp Ori: AXE97851.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1043662-1043905 bp Feature: domain Description: RVT_N Location: 1043662 -1043905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043950-1044598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043950-1044598 bp Feature: domain Description: GIIM Note: maturase Location: 1044652-1044883 bp Feature: domain Description: GIIM Note: maturase Location: 1044652 -1044883 bp Feature: domain Description: HNHc Note: nucleases Location: 1045114-1045267 bp Feature: domain Description: HNHc Note: nucleases Location: 1045114-10452 67 bp Feature: gene Location: 1045458-1047650 bp Ori: AXE97852.1 Feature: domain Description: uvrC Location: 1045548-1047648 bp Feature: domain Description: uvrC Location: 1045548-1047648 bp Feature: gene Location: 1047761-1048351 bp Ori: AXE97853.1 Gene: pgsA Feature: domain Description: PRK10832 Location: 1047764-1048334 bp Feature: domain Description: PRK10832 Location: 1047764-1048334 bp Feature: gene Location: 3311893-3312453 bp Ori: AXE99577.1 Feature: domain Description: Barstar Location: 3312178-3312418 bp Feature: domain Description: Barstar Location: 3312 178-3312 418 bp Feature: gene Location: 3312470-3312871 bp Ori: AXE99578.1 Feature: domain Description: RNase_Sa Location: 3312590-3312863 bp Feature: domain Description: RNase_Sa Location: 3312 590-3312 863 bp Feature: gene Location: 3313012-3314712 bp Ori: AXF00340.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3313069-3313312 bp Feature: domain Description: RVT_N Location: 3313069-3313312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3313357-3314005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3313357-3314005 bp Feature: domain Description: GIIM Note: maturase Location: 3314056-3314290 bp Feature: domain Description: GIIM Note: maturase Location: 3314056-33142 90 bp Feature: domain Description: HNHc Note: nucleases Location: 3314509-3314674 bp Feature: domain Description: HNHc Note: nucleases Location: 3314509-3314674 bp Feature: gene Location: 3316056-3318350 bp Ori: AXE99579.1 Feature: domain Description: PRK12861 Location: 3316071-3318342 bp Feature: domain Description: PRK12 861 Location: 3316071-3318342 bp Feature: gene Location: 3318601-3319596 bp Ori: AXE99580.1 Gene: thiL Feature: domain Description: PRK05731 Location: 3318607-3319585 bp Feature: domain Description: PRK05731 Location: 3318607-3319585 bp 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Associated domains:myRT PerM (COG0628), uvrA (PRK00349), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MFS_YajR_like (cd17472), PRK06958 (single-stranded DNA-binding protein; Provisional), ubiB (PRK04750), TPMT (pfam05724)
COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), COG2928 (Uncharacterized membrane protein ), R_switched_YjbE (TIGR03717), PilA (COG4969), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581), EarP (TIGR03837), uvrC (TIGR00194)
PRK10832 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase), Barstar (pfam01337), RNase_Sa (cd00607), PRK12861 (malic enzyme; Reviewed), PRK05731 (thiamine monophosphate kinase; Provisional)