myRT

myRT report for GCA_003330825.1_ASM333082v1

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Seq: CP024941.1 Paraburkholderia terricola strain mHS1 chromosome mHS1_A, complete sequence (4059171 bp)
Overview 1 RT 1: 30238-36610 bp Neighborhood of RT #1 [30238, 36639] RVT-Retrons 2A0305 PRK15067 Feature: gene Location: 30238-30681 bp Feature: gene Location: 31175-31432 bp Feature: gene Location: 31592-32941 bp Ori: AXE90944.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32057-32696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32057-32696 bp Feature: gene Location: 33798-35201 bp Ori: AXE90945.1 Gene: eat Feature: domain Description: 2A0305 Location: 33843-35187 bp Feature: domain Description: 2A0305 Location: 33843-351 87 bp Feature: gene Location: 35245-36639 bp Ori: AXE90946.1 Feature: domain Description: PRK15067 Location: 35248-36610 bp Feature: domain Description: PRK1 5067 Location: 35248-3661 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, 2A0305 (TIGR00908), PRK15067 (ethanolamine ammonia-lyase subunit EutB)

Seq: CP024942.1 Paraburkholderia terricola strain mHS1 chromosome mHS1_B, complete sequence (3058868 bp)
Overview 1 RT 1: 268301-271092 bp 2 RT 2: 342138-347964 bp 3 RT 3: 845113-850351 bp Neighborhood of RT #1 [268301, 271092] TnpB_IS66 InsE RVT-GII Neighborhood of RT #2 [342138, 348161] INT_XerDC_C RVT_N RVT-GII YkfC COG3547 Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #3 [845113, 850356] LysR RVT-GII DUF4096 RVT-GII PRK05463 Feature: gene Location: 268301-268648 bp Ori: AXE94639.1 Feature: domain Description: TnpB_IS66 Location: 268328-268619 bp Feature: domain Description: TnpB_IS66 Location: 2 6832 8-2 68619 bp Feature: gene Location: 268645-269079 bp Ori: AXE94640.1 Feature: domain Description: InsE Location: 268693-269041 bp Feature: domain Description: InsE Location: 2 68693-2 69041 bp Feature: gene Location: 269141-270196 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269552-270161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69552 -2 70161 bp Feature: gene Location: 270292-270573 bp Feature: gene Location: 270826-271092 bp Feature: gene Location: 342138-342803 bp Feature: domain Description: INT_XerDC_C Location: 342588-342762 bp Feature: domain Description: INT_XerDC_C Location: 342 588-342 762 bp Feature: gene Location: 343334-343603 bp Feature: gene Location: 343687-345186 bp Ori: AXE96820.1 Gene: ltrA Feature: domain Description: RVT_N Location: 343750-343987 bp Feature: domain Description: RVT_N Location: 343750-343987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344038-344680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344038-344680 bp Feature: domain Description: YkfC Location: 344764-344965 bp Feature: domain Description: YkfC Location: 344764-344965 bp Feature: gene Location: 345261-346361 bp Ori: AXE96821.1 Feature: domain Description: COG3547 Location: 345369-346239 bp Feature: domain Description: COG3547 Location: 345369-3462 39 bp Feature: gene Location: 346992-348161 bp Ori: AXE94688.1 Feature: domain Description: Zn_Tnp_IS91 Location: 347016-347280 bp Feature: domain Description: Zn_Tnp_IS91 Location: 347016-3472 80 bp Feature: domain Description: Y2_Tnp Location: 347406-347964 bp Feature: domain Description: Y2 _Tnp Location: 347406-347964 bp Feature: gene Location: 845113-845418 bp Feature: gene Location: 845573-846505 bp Ori: AXE95088.1 Feature: domain Description: LysR Location: 845576-846449 bp Feature: domain Description: LysR Location: 845576-846449 bp Feature: gene Location: 846810-847625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846813-847245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846813-8472 45 bp Feature: gene Location: 847667-847991 bp Ori: AXE95089.1 Feature: domain Description: DUF4096 Location: 847676-847886 bp Feature: domain Description: DUF4096 Location: 847676-847886 bp Feature: gene Location: 847991-848424 bp Feature: gene Location: 848438-849103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848849-849104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848849-849104 bp Feature: gene Location: 849107-849432 bp Feature: gene Location: 849586-850356 bp Ori: AXE95090.1 Feature: domain Description: PRK05463 Location: 849592-850351 bp Feature: domain Description: PRK05463 Location: 849592 -850351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII, INT_XerDC_C (cd00798), RVT_N (pfam13655), YkfC (COG3344), COG3547 (Transposase ), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), LysR (COG0583)
DUF4096 (pfam13340), PRK05463 (putative hydro-lyase)