myRT

myRT report for GCA_003336365.1_ASM333636v1

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Seq: CP031092.1 Ruegeria sp. NKC1-1 chromosome, complete genome (3641602 bp)
Overview 1 RT 1: 1894694-1897765 bp 2 RT 2: 2482909-2487320 bp 3 RT 3: 2561447-2569740 bp 4 RT 4: 3150077-3155602 bp 5 RT 5: 3257564-3264921 bp Neighborhood of RT #1 [1894694, 1897857] RVT-GII GIIM Sortase_D_1 CcmA Neighborhood of RT #2 [2482909, 2487358] Flavin_Reduct Tra5 RVT-GII RVT-CRISPR-like GIIM PotE Neighborhood of RT #3 [2561447, 2569740] TPR_19 TPR_19 PRK13880 RVT-GII DUF772 DDE_Tnp_1 RVT-GII HNHc VirD4 VirD4 Neighborhood of RT #4 [3150077, 3155640] acpS LolA RVT-CRISPR-like PLPDE_III_AR NikR Neighborhood of RT #5 [3257564, 3264938] DUF772 DDE_Tnp_1_2 RVT-GII AdaA Feature: gene Location: 1894694-1894957 bp Feature: gene Location: 1894958-1895233 bp Feature: gene Location: 1895356-1896109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1895362-1895434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 895362-1 895434 bp Feature: domain Description: GIIM Note: maturase Location: 1895827-1895938 bp Feature: domain Description: GIIM Note: maturase Location: 1 895827-1 895938 bp Feature: gene Location: 1896286-1896897 bp Ori: AXF56249.1 Feature: domain Description: Sortase_D_1 Location: 1896493-1896874 bp Feature: domain Description: Sortase_D_1 Location: 1 896493-1 896874 bp Feature: gene Location: 1897558-1897857 bp Ori: AXF56250.1 Feature: domain Description: CcmA Location: 1897561-1897765 bp Feature: domain Description: CcmA Location: 1 897561 -1 897765 bp Feature: gene Location: 2482909-2483391 bp Ori: AXF56766.1 Feature: domain Description: Flavin_Reduct Location: 2482939-2483353 bp Feature: domain Description: Flavin_Reduct Location: 2482939-2483353 bp Feature: gene Location: 2483502-2483777 bp Feature: domain Description: Tra5 Location: 2483508-2483775 bp Feature: domain Description: Tra5 Location: 2483508-2483775 bp Feature: gene Location: 2484581-2485198 bp Ori: AXF56767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2484803-2485184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2484803-24851 84 bp Feature: gene Location: 2485224-2485529 bp Ori: AXF56768.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2485251-2485413 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2485251 -248541 3 bp Feature: gene Location: 2485526-2485747 bp Ori: AXF56769.1 Feature: domain Description: GIIM Note: maturase Location: 2485529-2485682 bp Feature: domain Description: GIIM Note: maturase Location: 2485529-2485682 bp Feature: gene Location: 2486027-2487358 bp Ori: AXF56770.1 Feature: domain Description: PotE Location: 2486051-2487320 bp Feature: domain Description: PotE Location: 2486051 -2487320 bp Feature: gene Location: 2561447-2562556 bp Ori: AXF56840.1 Feature: domain Description: TPR_19 Location: 2562011-2562152 bp Feature: domain Description: TPR_1 9 Location: 256201 1 -25621 52 bp Feature: domain Description: TPR_19 Location: 2562287-2562404 bp Feature: domain Description: TPR_1 9 Location: 2562287-2562404 bp Feature: gene Location: 2562747-2563322 bp Ori: AXF56841.1 Feature: domain Description: PRK13880 Location: 2562789-2563305 bp Feature: domain Description: PRK1 3880 Location: 2562789-2563305 bp Feature: gene Location: 2564053-2564706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564353-2564698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564353-2564698 bp Feature: gene Location: 2564708-2566159 bp Ori: AXF56842.1 Feature: domain Description: DUF772 Location: 2564870-2565086 bp Feature: domain Description: DUF772 Location: 2564870-2565086 bp Feature: domain Description: DDE_Tnp_1 Location: 2565437-2565980 bp Feature: domain Description: DDE_Tnp_1 Location: 2565437-2565980 bp Feature: gene Location: 2566158-2567426 bp Ori: AXF56843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566236-2566599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566236-2566599 bp Feature: domain Description: HNHc Note: nucleases Location: 2567175-2567310 bp Feature: domain Description: HNHc Note: nucleases Location: 25671 75-256731 0 bp Feature: gene Location: 2567545-2569530 bp Ori: AXF56844.1 Feature: domain Description: VirD4 Location: 2567569-2568106 bp Feature: domain Description: VirD4 Location: 2567569-25681 06 bp Feature: domain Description: VirD4 Location: 2568466-2568961 bp Feature: domain Description: VirD4 Location: 2568466-2568961 bp Feature: gene Location: 2569546-2569740 bp Feature: gene Location: 3150077-3150439 bp Ori: AXF57340.1 Gene: acpS Feature: domain Description: acpS Location: 3150080-3150434 bp Feature: domain Description: acpS Location: 31 50080-31 50434 bp Feature: gene Location: 3151501-3152538 bp Ori: AXF57341.1 Feature: domain Description: LolA Location: 3151504-3152125 bp Feature: domain Description: LolA Location: 31 51 504-31 521 25 bp Feature: gene Location: 3152861-3153571 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3152864-3153098 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 31 52864-31 53098 bp Feature: gene Location: 3153911-3155047 bp Ori: AXF57342.1 Gene: alr Feature: domain Description: PLPDE_III_AR Location: 3153947-3155039 bp Feature: domain Description: PLPDE_III_AR Location: 31 53947-31 55039 bp Feature: gene Location: 3155317-3155640 bp Ori: AXF57343.1 Feature: domain Description: NikR Location: 3155377-3155602 bp Feature: domain Description: NikR Location: 31 55377-31 55602 bp Feature: gene Location: 3257564-3258280 bp Feature: gene Location: 3258657-3260147 bp Ori: AXF57443.1 Feature: domain Description: DUF772 Location: 3258822-3259032 bp Feature: domain Description: DUF772 Location: 3258822-3259032 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3259788-3260055 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 3259788-3260055 bp Feature: gene Location: 3261031-3262757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261289-3261940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261 289-3261 940 bp Feature: gene Location: 3263089-3264338 bp Feature: gene Location: 3264366-3264938 bp Ori: AXF57444.1 Feature: domain Description: AdaA Location: 3264411-3264921 bp Feature: domain Description: AdaA Location: 326441 1 -3264921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Sortase_D_1 (cd05828), CcmA (COG4133), Flavin_Reduct (smart00903), Tra5 (COG2801), RVT-CRISPR, PotE (COG0531), TPR_19 (pfam14559), PRK13880 (conjugal transfer coupling protein TraG; Provisional)
DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), HNHc (smart00507), VirD4 (COG3505), acpS (TIGR00516), LolA (pfam03548), PLPDE_III_AR (cd00430), NikR (COG0864), DDE_Tnp_1_2 (pfam13586), AdaA (COG2169)