myRT

myRT report for GCA_003336405.1_ASM333640v1

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Seq: CP031105.1 Escherichia coli strain AMSCJX02 chromosome, complete genome (4784688 bp)
Overview 1 RT 1: 878956-880863 bp Neighborhood of RT #1 [878956, 880862] HTH_Tnp_1 RVT-GII IS285 RAYT Feature: gene Location: 878956-879205 bp Ori: AXF68872.1 Feature: domain Description: HTH_Tnp_1 Location: 878965-879178 bp Feature: domain Description: HTH_Tnp_1 Location: 878965-8791 78 bp Feature: gene Location: 878049-878956 bp Feature: gene Location: 879460-879922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879472-879667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879472-879667 bp Feature: gene Location: 880065-880732 bp Feature: domain Description: IS285 Location: 880095-880473 bp Feature: domain Description: IS285 Location: 880095-880473 bp Feature: gene Location: 880740-880862 bp Feature: domain Description: RAYT Location: 880743-880863 bp Feature: domain Description: RAYT Location: 880743-880863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, IS285 (COG3328), RAYT (COG1943)

Seq: CP031111.1 Escherichia coli strain AMSCJX02 plasmid pAMSC6, complete sequence (95328 bp)
Overview 1 RT 1: 54315-58910 bp Neighborhood of RT #1 [54315, 58910] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 54315-55217 bp Ori: AXF73258.1 Feature: domain Description: DUF1281 Location: 54384-54912 bp Feature: domain Description: DUF12 81 Location: 54384-54912 bp Feature: domain Description: DUF1281_C Location: 54918-55158 bp Feature: domain Description: DUF12 81_C Location: 54918-55158 bp Feature: gene Location: 55221-55526 bp Feature: gene Location: 55755-57455 bp Ori: AXF73205.1 Gene: ltrA Feature: domain Description: RVT_N Location: 55809-56052 bp Feature: domain Description: RVT_N Location: 55809-56052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56097-56733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56097-56733 bp Feature: domain Description: GIIM Note: maturase Location: 56784-57018 bp Feature: domain Description: GIIM Note: maturase Location: 56784-57018 bp Feature: domain Description: HNHc Note: nucleases Location: 57249-57399 bp Feature: domain Description: HNHc Note: nucleases Location: 572 49-57399 bp Feature: gene Location: 58035-58688 bp Ori: AXF73206.1 Feature: domain Description: PRK13699 Location: 58080-58686 bp Feature: domain Description: PRK13699 Location: 58080-58686 bp Feature: gene Location: 58689-58910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)