myRT

myRT report for GCA_003343225.1_ASM334322v1

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Seq: CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome (5536539 bp)
Overview 1 RT 1: 1192633-1196622 bp 2 RT 2: 2799445-2807126 bp 3 RT 3: 4996246-5000672 bp 4 RT 4: 5495449-5498983 bp Neighborhood of RT #1 [1192633, 1196642] PRK02399 RVT-GII HTH_Tnp_1 InsE Neighborhood of RT #2 [2799445, 2808280] MATE_like_8 DDE_Tnp_Tn3 RVT-GII HTH_29 HTH_33 DDE_3 Peptidase_M91 Neighborhood of RT #3 [4996246, 5001301] DUF2235 DUF2235 RVT-GII Endotoxin_N Neighborhood of RT #4 [5495449, 5498983] toxin_TenpN arc_metj RVT-Retrons Feature: gene Location: 1192633-1193244 bp Feature: domain Description: PRK02399 Location: 1192639-1193245 bp Feature: domain Description: PRK02399 Location: 1 1 92639-1 1 93245 bp Feature: gene Location: 1193385-1194005 bp Feature: gene Location: 1194178-1195572 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194505-1195198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 94505-1 1 951 98 bp Feature: gene Location: 1196097-1196270 bp Feature: domain Description: HTH_Tnp_1 Location: 1196106-1196235 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 961 06-1 1 96235 bp Feature: gene Location: 1196340-1196642 bp Ori: AXG41744.1 Feature: domain Description: InsE Location: 1196349-1196622 bp Feature: domain Description: InsE Location: 1 1 96349-1 1 96622 bp Feature: gene Location: 2799445-2800770 bp Ori: AXG43033.1 Feature: domain Description: MATE_like_8 Location: 2799460-2800747 bp Feature: domain Description: MATE_like_8 Location: 2799460-2800747 bp Feature: gene Location: 2801039-2801416 bp Ori: AXG43034.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 2801060-2801318 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2801 060-2801 31 8 bp Feature: gene Location: 2801543-2801809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801747-2801810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801 747-2801 81 0 bp Feature: gene Location: 2802069-2803094 bp Ori: AXG43035.1 Feature: domain Description: HTH_29 Location: 2802153-2802321 bp Feature: domain Description: HTH_29 Location: 28021 53-2802321 bp Feature: domain Description: HTH_33 Location: 2802357-2802519 bp Feature: domain Description: HTH_33 Location: 2802357-280251 9 bp Feature: domain Description: DDE_3 Location: 2802561-2802990 bp Feature: domain Description: DDE_3 Location: 2802561 -2802990 bp Feature: gene Location: 2803370-2808280 bp Ori: AXG43036.1 Feature: domain Description: Peptidase_M91 Location: 2806604-2807126 bp Feature: domain Description: Peptidase_M91 Location: 2806604-28071 26 bp Feature: gene Location: 4996246-4996446 bp Feature: gene Location: 4997058-4998620 bp Ori: AXG44651.1 Feature: domain Description: DUF2235 Location: 4997133-4997580 bp Feature: domain Description: DUF2235 Location: 49971 33-4997580 bp Feature: domain Description: DUF2235 Location: 4997631-4997928 bp Feature: domain Description: DUF2235 Location: 4997631 -4997928 bp Feature: gene Location: 4998838-4999431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4999123-4999204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49991 23-4999204 bp Feature: gene Location: 4999502-4999703 bp Feature: gene Location: 5000048-5001301 bp Ori: AXG44652.1 Feature: domain Description: Endotoxin_N Location: 5000162-5000672 bp Feature: domain Description: Endotoxin_N Location: 50001 62-5000672 bp Feature: gene Location: 5495449-5495880 bp Ori: AXG45089.1 Feature: domain Description: toxin_TenpN Location: 5495452-5495800 bp Feature: domain Description: toxin_TenpN Location: 5495452-5495800 bp Feature: gene Location: 5496108-5496302 bp Ori: AXG45090.1 Feature: domain Description: arc_metj Location: 5496168-5496279 bp Feature: domain Description: arc_metj Location: 54961 68-5496279 bp Feature: gene Location: 5496938-5497972 bp Ori: AXG45364.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5496941-5497517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5496941 -549751 7 bp Feature: gene Location: 5497962-5498623 bp Feature: gene Location: 5498894-5498983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02399 (hypothetical protein; Provisional), RVT-GII, HTH_Tnp_1 (pfam01527), InsE (COG2963), MATE_like_8 (cd13134), DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), Peptidase_M91 (pfam14891)
DUF2235 (pfam09994), Endotoxin_N (pfam03945), toxin_TenpN (cd17493), arc_metj (LOAD_arc_metj), RVT-Retrons