myRT

myRT report for GCA_003343245.1_ASM334324v1

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Seq: CP024901.1 Photorhabdus laumondii subsp. laumondii strain TT01 chromosome, complete genome (5687677 bp)
Overview 1 RT 1: 1200350-1204339 bp 2 RT 2: 1272391-1292158 bp 3 RT 3: 2835377-2842800 bp 4 RT 4: 5177908-5182334 bp 5 RT 5: 5644519-5648053 bp Neighborhood of RT #1 [1200350, 1204359] PRK02399 RVT-GII HTH_Tnp_1 InsE Neighborhood of RT #2 [1272391, 1292232] DDE_Tnp_1_6 RVT-GII RVT-GII GIIM HTH_29 FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PP-binding PRK12316 Neighborhood of RT #3 [2835377, 2843954] MATE_like_8 DDE_Tnp_Tn3 RVT-GII HTH_29 HTH_33 DDE_3 Peptidase_M91 Neighborhood of RT #4 [5177908, 5182963] DUF2235 DUF2235 RVT-GII Endotoxin_N Neighborhood of RT #5 [5644519, 5648053] toxin_TenpN arc_metj RVT-Retrons Feature: gene Location: 1200350-1200961 bp Feature: domain Description: PRK02399 Location: 1200356-1200962 bp Feature: domain Description: PRK02399 Location: 1 200356-1 200962 bp Feature: gene Location: 1201102-1201722 bp Feature: gene Location: 1201895-1203289 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202222-1202915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 202222-1 20291 5 bp Feature: gene Location: 1203814-1203987 bp Feature: domain Description: HTH_Tnp_1 Location: 1203823-1203952 bp Feature: domain Description: HTH_Tnp_1 Location: 1 203823-1 203952 bp Feature: gene Location: 1204057-1204359 bp Ori: AXG46273.1 Feature: domain Description: InsE Location: 1204066-1204339 bp Feature: domain Description: InsE Location: 1 204066-1 204339 bp Feature: gene Location: 1272391-1273005 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1272580-1272931 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 272580-1 272931 bp Feature: gene Location: 1273482-1273751 bp Feature: gene Location: 1273739-1274371 bp Ori: AXG46336.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273862-1274345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273862-1 274345 bp Feature: gene Location: 1274465-1274659 bp Feature: gene Location: 1274749-1276158 bp Ori: AXG46338.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1275103-1275760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2751 03-1 275760 bp Feature: domain Description: GIIM Note: maturase Location: 1275841-1276060 bp Feature: domain Description: GIIM Note: maturase Location: 1 275841 -1 276060 bp Feature: gene Location: 1276539-1276733 bp Feature: domain Description: HTH_29 Location: 1276623-1276725 bp Feature: domain Description: HTH_29 Location: 1 276623-1 276725 bp Feature: gene Location: 1277281-1292232 bp Ori: AXG46339.1 Feature: domain Description: FMT_core_NRPS_like Location: 1277395-1277890 bp Feature: domain Description: FMT_core_NRPS_like Location: 1 277395-1 277890 bp Feature: domain Description: FMT_C_OzmH_like Location: 1277968-1278262 bp Feature: domain Description: FMT_C_OzmH_like Location: 1 277968-1 278262 bp Feature: domain Description: PRK12467 Location: 1278883-1280455 bp Feature: domain Description: PRK1 2467 Location: 1 278883-1 280455 bp Feature: domain Description: PRK12467 Location: 1280461-1284004 bp Feature: domain Description: PRK1 2467 Location: 1 280461 -1 284004 bp Feature: domain Description: PRK12467 Location: 1284055-1287232 bp Feature: domain Description: PRK1 2467 Location: 1 284055-1 287232 bp Feature: domain Description: PRK12467 Location: 1287268-1290247 bp Feature: domain Description: PRK1 2467 Location: 1 287268-1 290247 bp Feature: domain Description: PP-binding Location: 1290307-1290496 bp Feature: domain Description: PP-binding Location: 1 290307-1 290496 bp Feature: domain Description: PRK12316 Location: 1290517-1292158 bp Feature: domain Description: PRK1 231 6 Location: 1 29051 7-1 2921 58 bp Feature: gene Location: 2835377-2836444 bp Ori: AXG47494.1 Feature: domain Description: MATE_like_8 Location: 2835392-2836421 bp Feature: domain Description: MATE_like_8 Location: 2835392-2836421 bp Feature: gene Location: 2836713-2837090 bp Ori: AXG47495.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 2836734-2836992 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2836734-2836992 bp Feature: gene Location: 2837217-2837483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837421-2837484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837421 -2837484 bp Feature: gene Location: 2837743-2838768 bp Ori: AXG47496.1 Feature: domain Description: HTH_29 Location: 2837827-2837995 bp Feature: domain Description: HTH_29 Location: 2837827-2837995 bp Feature: domain Description: HTH_33 Location: 2838031-2838193 bp Feature: domain Description: HTH_33 Location: 2838031 -28381 93 bp Feature: domain Description: DDE_3 Location: 2838235-2838664 bp Feature: domain Description: DDE_3 Location: 2838235-2838664 bp Feature: gene Location: 2839044-2843954 bp Ori: AXG47497.1 Feature: domain Description: Peptidase_M91 Location: 2842278-2842800 bp Feature: domain Description: Peptidase_M91 Location: 2842278-2842800 bp Feature: gene Location: 5177908-5178108 bp Feature: gene Location: 5178720-5180282 bp Ori: AXG49287.1 Feature: domain Description: DUF2235 Location: 5178795-5179242 bp Feature: domain Description: DUF2235 Location: 51 78795-51 79242 bp Feature: domain Description: DUF2235 Location: 5179293-5179590 bp Feature: domain Description: DUF2235 Location: 51 79293-51 79590 bp Feature: gene Location: 5180500-5181093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5180785-5180866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 80785-51 80866 bp Feature: gene Location: 5181164-5181365 bp Feature: gene Location: 5181710-5182963 bp Ori: AXG49288.1 Feature: domain Description: Endotoxin_N Location: 5181824-5182334 bp Feature: domain Description: Endotoxin_N Location: 51 81 824-51 82334 bp Feature: gene Location: 5644519-5644950 bp Ori: AXG49675.1 Feature: domain Description: toxin_TenpN Location: 5644522-5644870 bp Feature: domain Description: toxin_TenpN Location: 5644522-5644870 bp Feature: gene Location: 5645178-5645372 bp Ori: AXG49676.1 Feature: domain Description: arc_metj Location: 5645238-5645349 bp Feature: domain Description: arc_metj Location: 5645238-5645349 bp Feature: gene Location: 5646008-5647042 bp Ori: AXG49974.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5646011-5646587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 564601 1 -5646587 bp Feature: gene Location: 5647032-5647693 bp Feature: gene Location: 5647964-5648053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02399 (hypothetical protein; Provisional), RVT-GII, HTH_Tnp_1 (pfam01527), InsE (COG2963), DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), HTH_29 (pfam13551), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional)
PP-binding (pfam00550), PRK12316 (peptide synthase; Provisional), MATE_like_8 (cd13134), DDE_Tnp_Tn3 (pfam01526), HTH_33 (pfam13592), DDE_3 (pfam13358), Peptidase_M91 (pfam14891), DUF2235 (pfam09994), Endotoxin_N (pfam03945), toxin_TenpN (cd17493)
arc_metj (LOAD_arc_metj), RVT-Retrons