myRT

myRT report for GCA_003344465.1_ASM334446v1

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Seq: CP030111.1 Escherichia coli strain MCJCHV-1 chromosome, complete genome (4939457 bp)
Overview 1 RT 1: 4386048-4390331 bp Neighborhood of RT #1 [4386048, 4390339] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 4386048-4386953 bp Feature: gene Location: 4386927-4387214 bp Feature: gene Location: 4387439-4387830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4387769-4387829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4387769-4387829 bp Feature: gene Location: 4388006-4388527 bp Ori: AXG63149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4388012-4388294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438801 2-4388294 bp Feature: domain Description: GIIM Note: maturase Location: 4388342-4388522 bp Feature: domain Description: GIIM Note: maturase Location: 4388342-4388522 bp Feature: gene Location: 4388849-4389037 bp Feature: gene Location: 4389110-4390339 bp Ori: AXG63151.1 Feature: domain Description: YesM Location: 4389590-4390331 bp Feature: domain Description: YesM Location: 4389590-4390331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: CP030112.1 Escherichia coli strain MCJCHV-1 plasmid pNMEC-O75A, complete sequence (88421 bp)
Overview 1 RT 1: 32326-35891 bp 2 RT 2: 59030-61918 bp 3 RT 3: 72674-76462 bp Neighborhood of RT #1 [32326, 35891] RVT-GII Intron_maturas2 HNHc PRK13732 Neighborhood of RT #2 [59030, 62318] Sigma70_r4_2 Sigma70_r4_2 PRK10173 RVT-GII InsE Neighborhood of RT #3 [72674, 76500] InsE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 32326-32532 bp Feature: gene Location: 32519-32596 bp Feature: gene Location: 33210-35111 bp Ori: AXG63871.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33477-34308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33477-34308 bp Feature: domain Description: Intron_maturas2 Location: 34422-34680 bp Feature: domain Description: Intron_maturas2 Location: 3442 2 -34680 bp Feature: domain Description: HNHc Note: nucleases Location: 34854-35016 bp Feature: domain Description: HNHc Note: nucleases Location: 34854-35016 bp Feature: gene Location: 35261-35758 bp Ori: AXG63872.1 Feature: domain Description: PRK13732 Location: 35264-35756 bp Feature: domain Description: PRK13732 Location: 352 64-35756 bp Feature: gene Location: 35783-35891 bp Feature: gene Location: 59030-59515 bp Ori: AXG63898.1 Feature: domain Description: Sigma70_r4_2 Location: 59090-59162 bp Feature: domain Description: Sigma70_r4_2 Location: 59090-59162 bp Feature: domain Description: Sigma70_r4_2 Location: 59231-59291 bp Feature: domain Description: Sigma70_r4_2 Location: 592 31-592 91 bp Feature: gene Location: 59637-60381 bp Feature: domain Description: PRK10173 Location: 59640-60078 bp Feature: domain Description: PRK10173 Location: 59640-60078 bp Feature: gene Location: 60420-60923 bp Ori: AXG63899.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60693-60765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60693-60765 bp Feature: gene Location: 61215-61586 bp Feature: gene Location: 61579-62318 bp Feature: domain Description: InsE Location: 61582-61918 bp Feature: domain Description: InsE Location: 61582 -61918 bp Feature: gene Location: 72674-73413 bp Feature: domain Description: InsE Location: 72677-73013 bp Feature: domain Description: InsE Location: 72 677-73013 bp Feature: gene Location: 73406-73777 bp Feature: gene Location: 74071-75594 bp Ori: AXG63913.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74344-75076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74344-75076 bp Feature: domain Description: GIIM Note: maturase Location: 75151-75349 bp Feature: domain Description: GIIM Note: maturase Location: 75151-75349 bp Feature: gene Location: 75684-76067 bp Feature: domain Description: PHA02517 Location: 75690-76023 bp Feature: domain Description: PHA02 517 Location: 75690-7602 3 bp Feature: gene Location: 76096-76500 bp Ori: AXG63914.1 Feature: domain Description: InsE Location: 76126-76462 bp Feature: domain Description: InsE Location: 7612 6-76462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), Sigma70_r4_2 (pfam08281), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), InsE (COG2963), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)