myRT

myRT report for GCA_003345315.1_ASM334531v1

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Seq: CP031098.1 Clostridium botulinum strain CFSAN034202 chromosome, complete genome (3954901 bp)
Overview 1 RT 1: 319210-324672 bp 2 RT 2: 330901-337019 bp 3 RT 3: 993964-997997 bp Neighborhood of RT #1 [319210, 324716] YcgL PcnB RVT_N RVT-GII GIIM GIY-YIG_LuxR_like Neighborhood of RT #2 [330901, 337027] DUF3862 YktD RVT_N RVT-GII GIIM HNHc tgl Neighborhood of RT #3 [993964, 998008] YmaF RVT_N RVT-GII GIIM HD_3 OmpR Feature: gene Location: 319210-319713 bp Ori: AXG94445.1 Feature: domain Description: YcgL Location: 319276-319549 bp Feature: domain Description: YcgL Location: 31 9276-31 9549 bp Feature: gene Location: 319703-321055 bp Ori: AXG94446.1 Feature: domain Description: PcnB Location: 319742-321005 bp Feature: domain Description: PcnB Location: 31 9742-321 005 bp Feature: gene Location: 321688-323508 bp Gene: ltrA Feature: domain Description: RVT_N Location: 321745-321844 bp Feature: domain Description: RVT_N Location: 321 745-321 844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322243-322696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322243-322696 bp Feature: domain Description: GIIM Note: maturase Location: 322759-322993 bp Feature: domain Description: GIIM Note: maturase Location: 322759-322993 bp Feature: gene Location: 323804-324286 bp Feature: gene Location: 324357-324716 bp Ori: AXG94448.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 324378-324672 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 324378-324672 bp Feature: gene Location: 330901-331371 bp Feature: domain Description: DUF3862 Location: 331081-331360 bp Feature: domain Description: DUF3862 Location: 331 081 -331 360 bp Feature: gene Location: 331402-331992 bp Ori: AXG94454.1 Feature: domain Description: YktD Location: 331423-331852 bp Feature: domain Description: YktD Location: 331 423-331 852 bp Feature: gene Location: 332697-334523 bp Ori: AXG94455.1 Gene: ltrA Feature: domain Description: RVT_N Location: 332754-332991 bp Feature: domain Description: RVT_N Location: 332754-332991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333054-333708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333054-333708 bp Feature: domain Description: GIIM Note: maturase Location: 333771-334005 bp Feature: domain Description: GIIM Note: maturase Location: 333771 -334005 bp Feature: domain Description: HNHc Note: nucleases Location: 334212-334377 bp Feature: domain Description: HNHc Note: nucleases Location: 33421 2-334377 bp Feature: gene Location: 335214-336209 bp Feature: gene Location: 336206-337027 bp Ori: AXG94457.1 Feature: domain Description: tgl Location: 336209-337019 bp Feature: domain Description: tgl Location: 336209-33701 9 bp Feature: gene Location: 993964-994302 bp Ori: AXG95017.1 Feature: domain Description: YmaF Location: 993994-994276 bp Feature: domain Description: YmaF Location: 993994-994276 bp Feature: gene Location: 994484-994699 bp Feature: gene Location: 994840-996661 bp Gene: ltrA Feature: domain Description: RVT_N Location: 994897-995134 bp Feature: domain Description: RVT_N Location: 994897-9951 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995197-995851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9951 97-995851 bp Feature: domain Description: GIIM Note: maturase Location: 995914-996037 bp Feature: domain Description: GIIM Note: maturase Location: 99591 4-996037 bp Feature: gene Location: 997215-997775 bp Ori: AXG95019.1 Feature: domain Description: HD_3 Location: 997254-997728 bp Feature: domain Description: HD_3 Location: 997254-997728 bp Feature: gene Location: 997868-998008 bp Ori: AXG95020.1 Feature: domain Description: OmpR Location: 997874-997997 bp Feature: domain Description: OmpR Location: 997874-997997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcgL (pfam05166), PcnB (COG0617), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), GIY-YIG_LuxR_like (cd10451), DUF3862 (pfam12978), YktD (COG3315), HNHc (smart00507), tgl (PRK03187)
YmaF (pfam12788), HD_3 (pfam13023), OmpR (COG0745)