myRT

myRT report for GCA_003345335.1_ASM334533v1

Download annotations/find similar RTs

Seq: CP031097.1 Clostridium botulinum strain CFSAN034200 chromosome, complete genome (3922194 bp)
Overview 1 RT 1: 2987121-2992330 bp 2 RT 2: 3346359-3352524 bp Neighborhood of RT #1 [2987121, 2992398] Ppnp YfcA YfcA RVT-GII HNHc YkuD_like PGRP RutF Neighborhood of RT #2 [3346359, 3352524] Beta-lactamase HTH_BltR RVT-GII HNHc DUF212 Feature: gene Location: 2987121-2987399 bp Ori: AXG93215.1 Feature: domain Description: Ppnp Location: 2987127-2987394 bp Feature: domain Description: Ppnp Location: 29871 27-2987394 bp Feature: gene Location: 2987441-2988316 bp Ori: AXG93216.1 Feature: domain Description: YfcA Location: 2987549-2987882 bp Feature: domain Description: YfcA Location: 2987549-2987882 bp Feature: domain Description: YfcA Location: 2987948-2988299 bp Feature: domain Description: YfcA Location: 2987948-2988299 bp Feature: gene Location: 2988549-2990429 bp Ori: AXG93217.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2988882-2989626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2988882-2989626 bp Feature: domain Description: HNHc Note: nucleases Location: 2990178-2990286 bp Feature: domain Description: HNHc Note: nucleases Location: 29901 78-2990286 bp Feature: gene Location: 2991116-2991754 bp Ori: AXG93218.1 Feature: domain Description: YkuD_like Location: 2991248-2991563 bp Feature: domain Description: YkuD_like Location: 2991 248-2991 563 bp Feature: domain Description: PGRP Location: 2991608-2991716 bp Feature: domain Description: PGRP Location: 2991 608-2991 71 6 bp Feature: gene Location: 2991811-2992398 bp Ori: AXG93219.1 Feature: domain Description: RutF Location: 2991820-2992330 bp Feature: domain Description: RutF Location: 2991 820-2992330 bp Feature: gene Location: 3346359-3347456 bp Ori: AXG94125.1 Feature: domain Description: Beta-lactamase Location: 3346380-3347412 bp Feature: domain Description: Beta-lactamase Location: 3346380-334741 2 bp Feature: gene Location: 3347979-3348814 bp Feature: domain Description: HTH_BltR Location: 3347997-3348243 bp Feature: domain Description: HTH_BltR Location: 3347997-3348243 bp Feature: gene Location: 3349662-3351542 bp Ori: AXG93538.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349995-3350739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349995-3350739 bp Feature: domain Description: HNHc Note: nucleases Location: 3351291-3351399 bp Feature: domain Description: HNHc Note: nucleases Location: 3351 291 -3351 399 bp Feature: gene Location: 3351656-3351943 bp Ori: AXG93539.1 Feature: domain Description: DUF212 Location: 3351662-3351932 bp Feature: domain Description: DUF21 2 Location: 3351 662-3351 932 bp Feature: gene Location: 3352003-3352524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ppnp, YfcA (COG0730), RVT-GII, HNHc (smart00507), YkuD_like (cl21614), PGRP (smart00701), RutF (TIGR03615), Beta-lactamase (pfam00144), HTH_BltR (cd04782), DUF212 (pfam02681)

Seq: CP031095.1 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence (270024 bp)
Overview 1 RT 1: 135091-141421 bp Neighborhood of RT #1 [135091, 141474] RVT-GII KOG1000 STKc_PknB_like KOG1803 Feature: gene Location: 135091-136970 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135424-135736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13542 4-135736 bp Feature: gene Location: 137077-138027 bp Feature: domain Description: KOG1000 Location: 137107-137311 bp Feature: domain Description: KOG1000 Location: 137107-137311 bp Feature: gene Location: 138322-141474 bp Ori: AXG90360.1 Feature: domain Description: STKc_PknB_like Location: 138370-138976 bp Feature: domain Description: STKc_PknB_like Location: 138370-138976 bp Feature: domain Description: KOG1803 Location: 139744-141421 bp Feature: domain Description: KOG1803 Location: 139744-14142 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), STKc_PknB_like (cd14014), KOG1803 (KOG1803, DNA helicase )