myRT

myRT report for GCA_003351785.1_ASM335178v1

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Seq: CP031230.1 Sporosarcina sp. PTS2304 chromosome, complete genome (3495830 bp)
Overview 1 RT 1: 785896-791445 bp 2 RT 2: 953500-963343 bp 3 RT 3: 1235477-1240253 bp 4 RT 4: 2096490-2102136 bp Neighborhood of RT #1 [785896, 791445] PRK05764 DnaD RVT-GII HNHc nth Neighborhood of RT #2 [953500, 963426] LplA PRK08115 RVT-GII HNHc PRK08115 RVT-GII Intron_maturas2 HNHc PRK08115 YqhQ Neighborhood of RT #3 [1235477, 1240252] PRK13927 PRK00024 RVT-GII RadC Neighborhood of RT #4 [2096490, 2102136] Transposase_mut RVT-GII HNHc IS285 Feature: gene Location: 785896-787089 bp Ori: AXH98889.1 Feature: domain Description: PRK05764 Location: 785908-787075 bp Feature: domain Description: PRK05764 Location: 785908-787075 bp Feature: gene Location: 787135-787857 bp Ori: AXH98890.1 Feature: domain Description: DnaD Location: 787165-787843 bp Feature: domain Description: DnaD Location: 7871 65-787843 bp Feature: gene Location: 788505-790337 bp Ori: AXH98891.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788835-789531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788835-789531 bp Feature: domain Description: HNHc Note: nucleases Location: 790092-790227 bp Feature: domain Description: HNHc Note: nucleases Location: 790092-790227 bp Feature: gene Location: 790466-791113 bp Ori: AXH98892.1 Gene: nth Feature: domain Description: nth Location: 790484-791054 bp Feature: domain Description: nth Location: 790484-791 054 bp Feature: gene Location: 791110-791445 bp Feature: gene Location: 953500-954333 bp Ori: AXH99049.1 Feature: domain Description: LplA Location: 953524-954331 bp Feature: domain Description: LplA Location: 953524-954331 bp Feature: gene Location: 954495-955874 bp Feature: domain Description: PRK08115 Location: 954528-955875 bp Feature: domain Description: PRK081 1 5 Location: 954528-955875 bp Feature: gene Location: 956634-958421 bp Ori: AXH99050.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956907-957600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956907-957600 bp Feature: domain Description: HNHc Note: nucleases Location: 958161-958299 bp Feature: domain Description: HNHc Note: nucleases Location: 9581 61 -958299 bp Feature: gene Location: 958502-958675 bp Ori: AXH99051.1 Feature: domain Description: PRK08115 Location: 958586-958658 bp Feature: domain Description: PRK081 1 5 Location: 958586-958658 bp Feature: gene Location: 959314-961146 bp Ori: AXH99052.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959581-960412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959581 -96041 2 bp Feature: domain Description: Intron_maturas2 Location: 960544-960766 bp Feature: domain Description: Intron_maturas2 Location: 960544-960766 bp Feature: domain Description: HNHc Note: nucleases Location: 960922-961120 bp Feature: domain Description: HNHc Note: nucleases Location: 960922-961 1 20 bp Feature: gene Location: 961325-962386 bp Ori: AXH99053.1 Feature: domain Description: PRK08115 Location: 961328-962384 bp Feature: domain Description: PRK081 1 5 Location: 961 328-962384 bp Feature: gene Location: 962434-963426 bp Ori: AXH99054.1 Feature: domain Description: YqhQ Location: 962437-963343 bp Feature: domain Description: YqhQ Location: 962437-963343 bp Feature: gene Location: 1235477-1236493 bp Ori: AXH99307.1 Feature: domain Description: PRK13927 Location: 1235486-1236482 bp Feature: domain Description: PRK1 3927 Location: 1 235486-1 236482 bp Feature: gene Location: 1236791-1237003 bp Ori: AXH99308.1 Feature: domain Description: PRK00024 Location: 1236860-1237001 bp Feature: domain Description: PRK00024 Location: 1 236860-1 237001 bp Feature: gene Location: 1237085-1238969 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1237382-1237847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 237382-1 237847 bp Feature: gene Location: 1239187-1239379 bp Feature: gene Location: 1239731-1240252 bp Feature: domain Description: RadC Location: 1239743-1240253 bp Feature: domain Description: RadC Location: 1 239743-1 240253 bp Feature: gene Location: 2096490-2097224 bp Feature: gene Location: 2097481-2098104 bp Feature: domain Description: Transposase_mut Location: 2097496-2098105 bp Feature: domain Description: Transposase_mut Location: 2097496-20981 05 bp Feature: gene Location: 2098782-2100614 bp Ori: AXI00036.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099112-2099808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20991 1 2-2099808 bp Feature: domain Description: HNHc Note: nucleases Location: 2100369-2100504 bp Feature: domain Description: HNHc Note: nucleases Location: 21 00369-21 00504 bp Feature: gene Location: 2100723-2101292 bp Feature: domain Description: IS285 Location: 2100729-2101272 bp Feature: domain Description: IS285 Location: 21 00729-21 01 272 bp Feature: gene Location: 2101579-2102136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05764 (aspartate aminotransferase; Provisional), DnaD (COG3935), RVT-GII, HNHc (smart00507), nth (TIGR01083), LplA (COG0095), PRK08115 (vitamin B12-dependent ribonucleotide reductase), Intron_maturas2 (pfam01348), YqhQ (COG3872), PRK13927 (rod shape-determining protein MreB; Provisional)
PRK00024 (DNA repair protein RadC), RadC (pfam04002), Transposase_mut (pfam00872), IS285 (COG3328)