myRT

myRT report for GCA_003351905.1_ASM335190v1

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Seq: CP022339.1 Cardinium endosymbiont of Sogatella furcifera strain cSfur chromosome, complete genome (1103593 bp)
Overview 1 RT 1: 222136-227182 bp 2 RT 2: 230563-239099 bp 3 RT 3: 305435-321005 bp 4 RT 4: 336232-339896 bp 5 RT 5: 580604-584346 bp 6 RT 6: 803999-810656 bp 7 RT 7: 855851-859593 bp 8 RT 8: 875277-881161 bp Neighborhood of RT #1 [222136, 227229] Transposase_31 PRK09857 IS285 RVT-GII GIIM HNHc RVT_N Transposase_31 Neighborhood of RT #2 [230563, 239134] IS285 RVT-GII GIIM SUKH_6 DEDD_Tnp_IS110 RVT-GII GIIM Transposase_20 ZF_C2H2 ZF_C2H2 ZF_C2H2 ZF_C2H2 KOG3623 Neighborhood of RT #3 [305435, 321016] zf-IS66 DDE_Tnp_IS66 HTH_28 RVT-GII GIIM DDE_Tnp_IS66 AAA-ATPase_like PDDEXK_9 DDE_Tnp_1_3 RVT-GII Transposase_31 ANK RVT-GII GIIM Transposase_20 PRK14455 Neighborhood of RT #4 [336232, 339922] Hc1 Transposase_20 RVT-GII GIIM COG3547 Neighborhood of RT #5 [580604, 584372] ComFC Transposase_20 RVT-GII GIIM COG3547 Neighborhood of RT #6 [803999, 810706] ANK ANK IS285 RVT-GII GIIM IS285 ZF_C2H2 ZF_C2H2 ZF_C2H2 Neighborhood of RT #7 [855851, 859619] ComFC Transposase_20 RVT-GII GIIM COG3547 Neighborhood of RT #8 [875277, 881268] DEDD_Tnp_IS110 RVT-GII GIIM Transposase_20 BamA BamA Feature: gene Location: 222136-223104 bp Ori: AXI23999.1 Feature: domain Description: Transposase_31 Location: 222154-222736 bp Feature: domain Description: Transposase_31 Location: 2221 54-222736 bp Feature: domain Description: PRK09857 Location: 222931-223081 bp Feature: domain Description: PRK09857 Location: 222931 -223081 bp Feature: gene Location: 223192-224430 bp Ori: AXI24000.1 Feature: domain Description: IS285 Location: 223288-224413 bp Feature: domain Description: IS285 Location: 223288-22441 3 bp Feature: gene Location: 224697-225980 bp Ori: AXI24001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224700-225318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224700-22531 8 bp Feature: domain Description: GIIM Note: maturase Location: 225393-225627 bp Feature: domain Description: GIIM Note: maturase Location: 225393-225627 bp Feature: domain Description: HNHc Note: nucleases Location: 225831-225966 bp Feature: domain Description: HNHc Note: nucleases Location: 225831 -225966 bp Feature: gene Location: 226081-226371 bp Ori: AXI24002.1 Feature: domain Description: RVT_N Location: 226111-226357 bp Feature: domain Description: RVT_N Location: 2261 1 1 -226357 bp Feature: gene Location: 226858-227229 bp Ori: AXI24003.1 Feature: domain Description: Transposase_31 Location: 226909-227182 bp Feature: domain Description: Transposase_31 Location: 226909-2271 82 bp Feature: gene Location: 230563-230784 bp Ori: AXI24007.1 Feature: domain Description: IS285 Location: 230578-230779 bp Feature: domain Description: IS285 Location: 230578-230779 bp Feature: gene Location: 230969-231286 bp Feature: gene Location: 231576-232370 bp Ori: AXI24009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231579-231981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 579-231 981 bp Feature: domain Description: GIIM Note: maturase Location: 232062-232197 bp Feature: domain Description: GIIM Note: maturase Location: 232062-2321 97 bp Feature: gene Location: 233400-234137 bp Ori: AXI24010.1 Feature: domain Description: SUKH_6 Location: 233727-234048 bp Feature: domain Description: SUKH_6 Location: 233727-234048 bp Feature: gene Location: 234367-234684 bp Ori: AXI24011.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 234379-234658 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 234379-234658 bp Feature: gene Location: 235076-235201 bp Feature: gene Location: 235185-236483 bp Ori: AXI24013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235482-236109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235482-2361 09 bp Feature: domain Description: GIIM Note: maturase Location: 236181-236385 bp Feature: domain Description: GIIM Note: maturase Location: 2361 81 -236385 bp Feature: gene Location: 236691-237335 bp Ori: AXI24014.1 Feature: domain Description: Transposase_20 Location: 236931-237180 bp Feature: domain Description: Transposase_20 Location: 236931 -2371 80 bp Feature: gene Location: 237434-239134 bp Ori: AXI24015.1 Feature: domain Description: ZF_C2H2 Location: 238490-238571 bp Feature: domain Description: ZF_C2H2 Location: 238490-238571 bp Feature: domain Description: ZF_C2H2 Location: 238598-238676 bp Feature: domain Description: ZF_C2H2 Location: 238598-238676 bp Feature: domain Description: ZF_C2H2 Location: 238703-238829 bp Feature: domain Description: ZF_C2H2 Location: 238703-238829 bp Feature: domain Description: ZF_C2H2 Location: 238862-239006 bp Feature: domain Description: ZF_C2H2 Location: 238862-239006 bp Feature: domain Description: KOG3623 Location: 239018-239099 bp Feature: domain Description: KOG3623 Location: 23901 8-239099 bp Feature: gene Location: 305435-306172 bp Ori: AXI24058.1 Feature: domain Description: zf-IS66 Location: 305525-305651 bp Feature: domain Description: zf-IS66 Location: 305525-305651 bp Feature: domain Description: DDE_Tnp_IS66 Location: 305699-306146 bp Feature: domain Description: DDE_Tnp_IS66 Location: 305699-3061 46 bp Feature: gene Location: 306882-307091 bp Ori: AXI24059.1 Feature: domain Description: HTH_28 Location: 306891-307035 bp Feature: domain Description: HTH_28 Location: 306891 -307035 bp Feature: gene Location: 307293-308600 bp Ori: AXI24060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307578-308220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307578-308220 bp Feature: domain Description: GIIM Note: maturase Location: 308295-308514 bp Feature: domain Description: GIIM Note: maturase Location: 308295-30851 4 bp Feature: gene Location: 309083-310036 bp Ori: AXI24061.1 Feature: domain Description: DDE_Tnp_IS66 Location: 309197-310001 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3091 97-31 0001 bp Feature: gene Location: 310400-312175 bp Ori: AXI24062.1 Feature: domain Description: AAA-ATPase_like Location: 310421-311315 bp Feature: domain Description: AAA-ATPase_like Location: 31 0421 -31 1 31 5 bp Feature: domain Description: PDDEXK_9 Location: 311786-312083 bp Feature: domain Description: PDDEXK_9 Location: 31 1 786-31 2083 bp Feature: gene Location: 312358-312777 bp Ori: AXI24063.1 Feature: domain Description: DDE_Tnp_1_3 Location: 312610-312745 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 31 261 0-31 2745 bp Feature: gene Location: 313307-313636 bp Ori: AXI24064.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313511-313613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 351 1 -31 361 3 bp Feature: gene Location: 313933-314070 bp Ori: AXI24065.1 Feature: domain Description: Transposase_31 Location: 313951-314068 bp Feature: domain Description: Transposase_31 Location: 31 3951 -31 4068 bp Feature: gene Location: 314618-315094 bp Ori: AXI24066.1 Feature: domain Description: ANK Location: 314663-315035 bp Feature: domain Description: ANK Location: 31 4663-31 5035 bp Feature: gene Location: 316349-316474 bp Feature: gene Location: 316458-317756 bp Ori: AXI24068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316755-317382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 6755-31 7382 bp Feature: domain Description: GIIM Note: maturase Location: 317454-317658 bp Feature: domain Description: GIIM Note: maturase Location: 31 7454-31 7658 bp Feature: gene Location: 317964-318608 bp Ori: AXI24069.1 Feature: domain Description: Transposase_20 Location: 318204-318453 bp Feature: domain Description: Transposase_20 Location: 31 8204-31 8453 bp Feature: gene Location: 319901-321016 bp Ori: AXI24070.1 Feature: domain Description: PRK14455 Location: 319958-321005 bp Feature: domain Description: PRK1 4455 Location: 31 9958-321 005 bp Feature: gene Location: 336232-336429 bp Ori: AXI24081.1 Feature: domain Description: Hc1 Location: 336244-336418 bp Feature: domain Description: Hc1 Location: 336244-33641 8 bp Feature: gene Location: 336948-337592 bp Ori: AXI24082.1 Feature: domain Description: Transposase_20 Location: 337188-337437 bp Feature: domain Description: Transposase_20 Location: 3371 88-337437 bp Feature: gene Location: 337800-339098 bp Ori: AXI24083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338097-338724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338097-338724 bp Feature: domain Description: GIIM Note: maturase Location: 338796-339000 bp Feature: domain Description: GIIM Note: maturase Location: 338796-339000 bp Feature: gene Location: 339082-339207 bp Feature: gene Location: 339599-339922 bp Ori: AXI24085.1 Feature: domain Description: COG3547 Location: 339611-339896 bp Feature: domain Description: COG3547 Location: 33961 1 -339896 bp Feature: gene Location: 580604-581299 bp Ori: AXI24263.1 Feature: domain Description: ComFC Location: 580619-581288 bp Feature: domain Description: ComFC Location: 58061 9-581 288 bp Feature: gene Location: 581398-582042 bp Ori: AXI24264.1 Feature: domain Description: Transposase_20 Location: 581638-581887 bp Feature: domain Description: Transposase_20 Location: 581 638-581 887 bp Feature: gene Location: 582250-583548 bp Ori: AXI24265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582547-583174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582547-5831 74 bp Feature: domain Description: GIIM Note: maturase Location: 583246-583450 bp Feature: domain Description: GIIM Note: maturase Location: 583246-583450 bp Feature: gene Location: 583532-583657 bp Feature: gene Location: 584049-584372 bp Ori: AXI24267.1 Feature: domain Description: COG3547 Location: 584061-584346 bp Feature: domain Description: COG3547 Location: 584061 -584346 bp Feature: gene Location: 803999-804766 bp Ori: AXI24414.1 Feature: domain Description: ANK Location: 804011-804224 bp Feature: domain Description: ANK Location: 80401 1 -804224 bp Feature: domain Description: ANK Location: 804275-804644 bp Feature: domain Description: ANK Location: 804275-804644 bp Feature: gene Location: 804960-805463 bp Ori: AXI24415.1 Feature: domain Description: IS285 Location: 805011-805458 bp Feature: domain Description: IS285 Location: 80501 1 -805458 bp Feature: gene Location: 805520-806827 bp Ori: AXI24416.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805841-806465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805841 -806465 bp Feature: domain Description: GIIM Note: maturase Location: 806543-806753 bp Feature: domain Description: GIIM Note: maturase Location: 806543-806753 bp Feature: gene Location: 807283-808173 bp Ori: AXI24417.1 Feature: domain Description: IS285 Location: 807379-808114 bp Feature: domain Description: IS285 Location: 807379-8081 1 4 bp Feature: gene Location: 808907-810706 bp Ori: AXI24418.1 Feature: domain Description: ZF_C2H2 Location: 809888-810131 bp Feature: domain Description: ZF_C2H2 Location: 809888-81 01 31 bp Feature: domain Description: ZF_C2H2 Location: 810230-810476 bp Feature: domain Description: ZF_C2H2 Location: 81 0230-81 0476 bp Feature: domain Description: ZF_C2H2 Location: 810497-810656 bp Feature: domain Description: ZF_C2H2 Location: 81 0497-81 0656 bp Feature: gene Location: 855851-856546 bp Ori: AXI24449.1 Feature: domain Description: ComFC Location: 855866-856535 bp Feature: domain Description: ComFC Location: 855866-856535 bp Feature: gene Location: 856645-857289 bp Ori: AXI24450.1 Feature: domain Description: Transposase_20 Location: 856885-857134 bp Feature: domain Description: Transposase_20 Location: 856885-8571 34 bp Feature: gene Location: 857497-858795 bp Ori: AXI24451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857794-858421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857794-858421 bp Feature: domain Description: GIIM Note: maturase Location: 858493-858697 bp Feature: domain Description: GIIM Note: maturase Location: 858493-858697 bp Feature: gene Location: 858779-858904 bp Feature: gene Location: 859296-859619 bp Ori: AXI24453.1 Feature: domain Description: COG3547 Location: 859308-859593 bp Feature: domain Description: COG3547 Location: 859308-859593 bp Feature: gene Location: 875277-875594 bp Ori: AXI24465.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 875289-875568 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 875289-875568 bp Feature: gene Location: 875986-876111 bp Feature: gene Location: 876095-877393 bp Ori: AXI24467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876392-877019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876392-87701 9 bp Feature: domain Description: GIIM Note: maturase Location: 877091-877295 bp Feature: domain Description: GIIM Note: maturase Location: 877091 -877295 bp Feature: gene Location: 877601-878245 bp Ori: AXI24468.1 Feature: domain Description: Transposase_20 Location: 877841-878090 bp Feature: domain Description: Transposase_20 Location: 877841 -878090 bp Feature: gene Location: 878626-881268 bp Ori: AXI24469.1 Feature: domain Description: BamA Location: 878731-879301 bp Feature: domain Description: BamA Location: 878731 -879301 bp Feature: domain Description: BamA Location: 879451-881161 bp Feature: domain Description: BamA Location: 879451 -881 1 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), PRK09857 (recombination-promoting nuclease RpnA), IS285 (COG3328), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), SUKH_6 (pfam14568), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
ZF_C2H2 (sd00020), KOG3623 (KOG3623, Homeobox transcription factor SIP1 ), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HTH_28 (pfam13518), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), DDE_Tnp_1_3 (pfam13612), ANK (smart00248), PRK14455 (ribosomal RNA large subunit methyltransferase N; Provisional)
Hc1 (pfam07432), COG3547 (Transposase ), ComFC (COG1040), BamA (COG4775)