myRT

myRT report for GCA_003363675.2_ASM336367v2

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Seq: CP041379.1 Bacteroides intestinalis strain APC919/174 chromosome, complete genome (5785761 bp)
Overview 1 RT 1: 888419-901193 bp 2 RT 2: 1975142-1978595 bp 3 RT 3: 2802240-2807379 bp 4 RT 4: 3251519-3258262 bp Neighborhood of RT #1 [888419, 901975] OMP_RagA_SusC PDDEXK_2 fliH RVT_N RVT-GII GIIM YvrE Reg_prop Reg_prop Reg_prop Y_Y_Y BaeS PRK11107 YesN Glyco_hydro_20b GH20_hexosaminidase Neighborhood of RT #2 [1975142, 1978595] RVT-DGRs Neighborhood of RT #3 [2802240, 2807405] HptA MFS_DtpA_like RVT-Retrons secD def Neighborhood of RT #4 [3251519, 3258270] HU_rel T_den_put_tspse RVT_N RVT-GII GIIM AAA-ATPase_like PDDEXK_9 Feature: gene Location: 888419-891628 bp Ori: QDO67977.1 Feature: domain Description: OMP_RagA_SusC Location: 888503-891623 bp Feature: domain Description: OMP_RagA_SusC Location: 888503-891 623 bp Feature: gene Location: 891969-892821 bp Feature: domain Description: PDDEXK_2 Location: 891987-892638 bp Feature: domain Description: PDDEXK_2 Location: 891 987-892638 bp Feature: domain Description: fliH Location: 892650-892740 bp Feature: domain Description: fliH Location: 892650-892740 bp Feature: gene Location: 892961-894595 bp Ori: QDO71495.1 Gene: ltrA Feature: domain Description: RVT_N Location: 893015-893258 bp Feature: domain Description: RVT_N Location: 89301 5-893258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893303-893948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893303-893948 bp Feature: domain Description: GIIM Note: maturase Location: 893999-894233 bp Feature: domain Description: GIIM Note: maturase Location: 893999-894233 bp Feature: gene Location: 895460-899368 bp Ori: QDO67978.1 Feature: domain Description: YvrE Location: 896069-896177 bp Feature: domain Description: YvrE Location: 896069-8961 77 bp Feature: domain Description: Reg_prop Location: 896186-896249 bp Feature: domain Description: Reg_prop Location: 8961 86-896249 bp Feature: domain Description: Reg_prop Location: 896324-896387 bp Feature: domain Description: Reg_prop Location: 896324-896387 bp Feature: domain Description: Reg_prop Location: 897122-897179 bp Feature: domain Description: Reg_prop Location: 8971 22-8971 79 bp Feature: domain Description: Y_Y_Y Location: 897500-897674 bp Feature: domain Description: Y_Y_Y Location: 897500-897674 bp Feature: domain Description: BaeS Location: 897785-898493 bp Feature: domain Description: BaeS Location: 897785-898493 bp Feature: domain Description: PRK11107 Location: 898562-898988 bp Feature: domain Description: PRK1 1 1 07 Location: 898562-898988 bp Feature: domain Description: YesN Location: 899120-899363 bp Feature: domain Description: YesN Location: 8991 20-899363 bp Feature: gene Location: 899960-901975 bp Ori: QDO67979.1 Feature: domain Description: Glyco_hydro_20b Location: 900035-900386 bp Feature: domain Description: Glyco_hydro_20b Location: 900035-900386 bp Feature: domain Description: GH20_hexosaminidase Location: 900401-901193 bp Feature: domain Description: GH20_hexosaminidase Location: 900401 -901 1 93 bp Feature: gene Location: 1975142-1976569 bp Feature: gene Location: 1976613-1976807 bp Feature: gene Location: 1976868-1977908 bp Ori: QDO68682.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1977069-1977774 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 977069-1 977774 bp Feature: gene Location: 1977889-1978281 bp Feature: gene Location: 1978281-1978595 bp Feature: gene Location: 2802240-2802776 bp Ori: QDO69272.1 Gene: hpt Feature: domain Description: HptA Location: 2802258-2802768 bp Feature: domain Description: HptA Location: 2802258-2802768 bp Feature: gene Location: 2802816-2804354 bp Ori: QDO69273.1 Feature: domain Description: MFS_DtpA_like Location: 2802837-2804325 bp Feature: domain Description: MFS_DtpA_like Location: 2802837-2804325 bp Feature: gene Location: 2804626-2805747 bp Ori: QDO69274.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2804938-2805490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2804938-2805490 bp Feature: gene Location: 2805741-2806568 bp Ori: QDO69275.1 Feature: domain Description: secD Location: 2805939-2806119 bp Feature: domain Description: secD Location: 2805939-28061 1 9 bp Feature: gene Location: 2806845-2807405 bp Ori: QDO69276.1 Gene: def Feature: domain Description: def Location: 2806848-2807379 bp Feature: domain Description: def Location: 2806848-2807379 bp Feature: gene Location: 3251519-3251980 bp Ori: QDO69586.1 Feature: domain Description: HU_rel Location: 3251546-3251888 bp Feature: domain Description: HU_rel Location: 3251 546-3251 888 bp Feature: gene Location: 3252164-3253048 bp Ori: QDO69587.1 Feature: domain Description: T_den_put_tspse Location: 3252194-3252908 bp Feature: domain Description: T_den_put_tspse Location: 32521 94-3252908 bp Feature: gene Location: 3253188-3254822 bp Ori: QDO71574.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3253242-3253485 bp Feature: domain Description: RVT_N Location: 3253242-3253485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253530-3254175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253530-32541 75 bp Feature: domain Description: GIIM Note: maturase Location: 3254226-3254460 bp Feature: domain Description: GIIM Note: maturase Location: 3254226-3254460 bp Feature: gene Location: 3255613-3256290 bp Feature: gene Location: 3256510-3258270 bp Ori: QDO69588.1 Feature: domain Description: AAA-ATPase_like Location: 3256555-3257455 bp Feature: domain Description: AAA-ATPase_like Location: 3256555-3257455 bp Feature: domain Description: PDDEXK_9 Location: 3257929-3258262 bp Feature: domain Description: PDDEXK_9 Location: 3257929-3258262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), PDDEXK_2 (pfam12784), fliH (PRK13386), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YvrE (COG3386), Reg_prop (pfam07494), Y_Y_Y (pfam07495), BaeS (COG0642)
PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753), Glyco_hydro_20b (pfam02838), GH20_hexosaminidase (cl02948), RVT-DGRs, HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), def (PRK00150)
HU_rel (TIGR01201), T_den_put_tspse (TIGR01784), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)