myRT

myRT report for GCA_003367555.1_ASM336755v1

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Seq: CP026130.1 Klebsiella pneumoniae strain F1 chromosome, complete genome (5518379 bp)
Overview 1 RT 1: 1231768-1236653 bp 2 RT 2: 1395810-1398586 bp 3 RT 3: 1847780-1852652 bp 4 RT 4: 1868393-1874655 bp 5 RT 5: 3103705-3107843 bp 6 RT 6: 3254996-3259095 bp 7 RT 7: 3327828-3332090 bp 8 RT 8: 3652944-3657782 bp Neighborhood of RT #1 [1231768, 1236658] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1395810, 1398586] RVT-GII Neighborhood of RT #3 [1847780, 1852666] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1868393, 1874655] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3103705, 3107843] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3254996, 3259106] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3327828, 3332128] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3652944, 3657832] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1231768-1234152 bp Ori: AXK95745.1 Feature: domain Description: Phage_GPA Location: 1232332-1233298 bp Feature: domain Description: Phage_GPA Location: 1 232332-1 233298 bp Feature: gene Location: 1234382-1234633 bp Feature: gene Location: 1234633-1236117 bp Ori: AXK95747.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1235035-1235725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 235035-1 235725 bp Feature: gene Location: 1236225-1236413 bp Feature: gene Location: 1236425-1236658 bp Ori: AXK95749.1 Feature: domain Description: DinI Location: 1236470-1236653 bp Feature: domain Description: DinI Location: 1 236470-1 236653 bp Feature: gene Location: 1395810-1396013 bp Feature: gene Location: 1396006-1396344 bp Feature: gene Location: 1396441-1397925 bp Ori: AXK95908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396843-1397533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 396843-1 397533 bp Feature: gene Location: 1397925-1398176 bp Feature: gene Location: 1398329-1398586 bp Feature: gene Location: 1847780-1848949 bp Ori: AXK96289.1 Feature: domain Description: dacD Location: 1847789-1848944 bp Feature: domain Description: dacD Location: 1 847789-1 848944 bp Feature: gene Location: 1849219-1849470 bp Feature: gene Location: 1849470-1850954 bp Ori: AXK96291.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849872-1850562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849872-1 850562 bp Feature: gene Location: 1851036-1851509 bp Ori: AXK96292.1 Feature: domain Description: PRK10016 Location: 1851039-1851498 bp Feature: domain Description: PRK1 001 6 Location: 1 851 039-1 851 498 bp Feature: gene Location: 1851608-1852666 bp Ori: AXK96293.1 Feature: domain Description: YccC Location: 1851614-1852652 bp Feature: domain Description: YccC Location: 1 851 61 4-1 852652 bp Feature: gene Location: 1868393-1869496 bp Ori: AXK96313.1 Feature: domain Description: STKc_PknB_like Location: 1868525-1868966 bp Feature: domain Description: STKc_PknB_like Location: 1 868525-1 868966 bp Feature: gene Location: 1869566-1869808 bp Feature: gene Location: 1870055-1871155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870238-1870766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 870238-1 870766 bp Feature: gene Location: 1871270-1873546 bp Ori: AXK96314.1 Feature: domain Description: AAA_15 Location: 1871303-1872311 bp Feature: domain Description: AAA_1 5 Location: 1 871 303-1 87231 1 bp Feature: gene Location: 1874425-1874655 bp Feature: gene Location: 3103705-3104970 bp Ori: AXK97473.1 Feature: domain Description: umuC Location: 3103708-3104968 bp Feature: domain Description: umuC Location: 31 03708-31 04968 bp Feature: gene Location: 3104972-3105391 bp Ori: AXK97474.1 Feature: domain Description: PRK10276 Location: 3104975-3105386 bp Feature: domain Description: PRK1 0276 Location: 31 04975-31 05386 bp Feature: gene Location: 3105471-3106955 bp Ori: AXK97475.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3105873-3106563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 05873-31 06563 bp Feature: gene Location: 3106955-3107206 bp Feature: gene Location: 3107754-3107843 bp Feature: gene Location: 3254996-3256261 bp Ori: AXK97620.1 Feature: domain Description: umuC Location: 3254999-3256259 bp Feature: domain Description: umuC Location: 3254999-3256259 bp Feature: gene Location: 3256264-3256683 bp Ori: AXK97621.1 Feature: domain Description: PRK10276 Location: 3256267-3256678 bp Feature: domain Description: PRK1 0276 Location: 3256267-3256678 bp Feature: gene Location: 3256762-3258246 bp Ori: AXK97622.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257164-3257854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32571 64-3257854 bp Feature: gene Location: 3258246-3258497 bp Feature: gene Location: 3258864-3259106 bp Ori: AXK97624.1 Feature: domain Description: DinI Location: 3258915-3259095 bp Feature: domain Description: DinI Location: 325891 5-3259095 bp Feature: gene Location: 3327828-3328118 bp Feature: gene Location: 3328130-3328363 bp Ori: AXK97696.1 Feature: domain Description: PRK10597 Location: 3328133-3328358 bp Feature: domain Description: PRK1 0597 Location: 33281 33-3328358 bp Feature: gene Location: 3328442-3329926 bp Ori: AXK97697.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3328844-3329534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3328844-3329534 bp Feature: gene Location: 3329926-3330177 bp Feature: gene Location: 3330767-3332128 bp Ori: AXK97699.1 Feature: domain Description: PRK05318 Location: 3330791-3332090 bp Feature: domain Description: PRK0531 8 Location: 3330791 -3332090 bp Feature: gene Location: 3652944-3653822 bp Ori: AXK99813.1 Feature: domain Description: Phage_CI_repr Location: 3652971-3653154 bp Feature: domain Description: Phage_CI_repr Location: 3652971 -36531 54 bp Feature: domain Description: Phage_CI_repr Location: 3653283-3653475 bp Feature: domain Description: Phage_CI_repr Location: 3653283-3653475 bp Feature: domain Description: Phage_CI_C Location: 3653502-3653796 bp Feature: domain Description: Phage_CI_C Location: 3653502-3653796 bp Feature: gene Location: 3653834-3654778 bp Feature: gene Location: 3654877-3656361 bp Ori: AXK97996.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655279-3655969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655279-3655969 bp Feature: gene Location: 3656361-3656612 bp Feature: gene Location: 3656780-3657832 bp Ori: AXK97998.1 Feature: domain Description: int Location: 3656783-3657782 bp Feature: domain Description: int Location: 3656783-3657782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP026131.1 Klebsiella pneumoniae strain F1 plasmid pF1_1, complete sequence (164510 bp)
Overview 1 RT 1: 50202-54404 bp 2 RT 2: 125667-129763 bp Neighborhood of RT #1 [50202, 54421] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Neighborhood of RT #2 [125667, 129888] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 50202-50873 bp Ori: AXK99964.1 Feature: domain Description: Plasmid_stab_B Location: 50217-50424 bp Feature: domain Description: Plasmid_stab_B Location: 502 17-5042 4 bp Feature: domain Description: Plasmid_stab_B Location: 50529-50736 bp Feature: domain Description: Plasmid_stab_B Location: 5052 9-50736 bp Feature: gene Location: 50876-51847 bp Ori: AXK99965.1 Feature: domain Description: StbA Location: 50879-51824 bp Feature: domain Description: StbA Location: 50879-5182 4 bp Feature: gene Location: 52096-53580 bp Ori: AXK99966.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52498-53188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 498-53188 bp Feature: gene Location: 53580-53831 bp Feature: gene Location: 53990-54421 bp Ori: AXK99968.1 Feature: domain Description: PRK10276 Location: 54041-54404 bp Feature: domain Description: PRK102 76 Location: 54041-54404 bp Feature: gene Location: 125667-125897 bp Feature: gene Location: 126160-126417 bp Feature: gene Location: 127297-128964 bp Ori: AXL00046.1 Gene: ltrA Feature: domain Description: RVT_N Location: 127345-127582 bp Feature: domain Description: RVT_N Location: 12 7345-12 7582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127633-128275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7633-12 82 75 bp Feature: domain Description: GIIM Note: maturase Location: 128326-128560 bp Feature: domain Description: GIIM Note: maturase Location: 12 832 6-12 8560 bp Feature: domain Description: HNHc Note: nucleases Location: 128770-128929 bp Feature: domain Description: HNHc Note: nucleases Location: 12 8770-12 892 9 bp Feature: gene Location: 129278-129469 bp Feature: gene Location: 129466-129888 bp Ori: AXL00048.1 Feature: domain Description: DUF1380 Location: 129469-129763 bp Feature: domain Description: DUF1380 Location: 12 9469-12 9763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)