myRT

myRT report for GCA_003369735.1_ASM336973v1

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Seq: CP030913.1 Pseudomonas aeruginosa strain Y89 chromosome, complete genome (6868832 bp)
Overview 1 RT 1: 683024-693357 bp 2 RT 2: 709615-717782 bp Neighborhood of RT #1 [683024, 693359] HTH_XRE RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [709615, 717796] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 683024-683254 bp Feature: gene Location: 683352-683591 bp Ori: AXL81178.1 Feature: domain Description: HTH_XRE Location: 683364-683508 bp Feature: domain Description: HTH_XRE Location: 683364-683508 bp Feature: gene Location: 684896-686581 bp Ori: AXL81179.1 Feature: domain Description: RVT_N Location: 684953-685193 bp Feature: domain Description: RVT_N Location: 684953-6851 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685241-685877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685241 -685877 bp Feature: domain Description: GIIM Note: maturase Location: 685931-686162 bp Feature: domain Description: GIIM Note: maturase Location: 685931 -6861 62 bp Feature: domain Description: HNH Note: nucleases Location: 686414-686552 bp Feature: domain Description: HNH Note: nucleases Location: 68641 4-686552 bp Feature: gene Location: 687662-691399 bp Ori: AXL81180.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 687770-688427 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 687770-688427 bp Feature: domain Description: PRK09776 Location: 688640-689111 bp Feature: domain Description: PRK09776 Location: 688640-6891 1 1 bp Feature: domain Description: PAS Location: 689183-689693 bp Feature: domain Description: PAS Location: 6891 83-689693 bp Feature: domain Description: PRK10060 Location: 689702-691349 bp Feature: domain Description: PRK1 0060 Location: 689702-691 349 bp Feature: gene Location: 691506-693359 bp Ori: AXL81181.1 Feature: domain Description: PRK05658 Location: 691518-693357 bp Feature: domain Description: PRK05658 Location: 691 51 8-693357 bp Feature: gene Location: 709615-710907 bp Ori: AXL81199.1 Feature: domain Description: PRK10770 Location: 709705-710899 bp Feature: domain Description: PRK1 0770 Location: 709705-71 0899 bp Feature: gene Location: 710888-713662 bp Ori: AXL81200.1 Feature: domain Description: LptD Location: 711083-713648 bp Feature: domain Description: LptD Location: 71 1 083-71 3648 bp Feature: gene Location: 713795-715105 bp Ori: AXL81201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713798-714374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 3798-71 4374 bp Feature: domain Description: YkfC Location: 714584-714737 bp Feature: domain Description: YkfC Location: 71 4584-71 4737 bp Feature: domain Description: HNH Note: nucleases Location: 714911-715049 bp Feature: domain Description: HNH Note: nucleases Location: 71 491 1 -71 5049 bp Feature: gene Location: 716349-716483 bp Feature: gene Location: 716780-717796 bp Ori: AXL81203.1 Feature: domain Description: COG3178 Location: 716783-717782 bp Feature: domain Description: COG31 78 Location: 71 6783-71 7782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )