myRT

myRT report for GCA_003369755.1_ASM336975v1

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Seq: CP030912.1 Pseudomonas aeruginosa strain Y82 chromosome, complete genome (7106857 bp)
Overview 1 RT 1: 687591-697896 bp 2 RT 2: 714154-722974 bp 3 RT 3: 1189995-1197992 bp Neighborhood of RT #1 [687591, 697898] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [714154, 723003] PRK10770 LptD RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [1189995, 1198009] ABC_phnC DUF772 RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 687591-688712 bp Ori: AXL74769.1 Feature: domain Description: COG3177 Location: 687609-688701 bp Feature: domain Description: COG31 77 Location: 687609-688701 bp Feature: gene Location: 688971-689132 bp Feature: gene Location: 689435-691120 bp Ori: AXL74771.1 Feature: domain Description: RVT_N Location: 689492-689732 bp Feature: domain Description: RVT_N Location: 689492-689732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689780-690416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689780-69041 6 bp Feature: domain Description: GIIM Note: maturase Location: 690470-690701 bp Feature: domain Description: GIIM Note: maturase Location: 690470-690701 bp Feature: domain Description: HNH Note: nucleases Location: 690953-691091 bp Feature: domain Description: HNH Note: nucleases Location: 690953-691 091 bp Feature: gene Location: 692201-695938 bp Ori: AXL74772.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 692309-692966 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 692309-692966 bp Feature: domain Description: PRK09776 Location: 693179-693650 bp Feature: domain Description: PRK09776 Location: 6931 79-693650 bp Feature: domain Description: PAS Location: 693707-694232 bp Feature: domain Description: PAS Location: 693707-694232 bp Feature: domain Description: PRK10060 Location: 694244-695888 bp Feature: domain Description: PRK1 0060 Location: 694244-695888 bp Feature: gene Location: 696045-697898 bp Ori: AXL74773.1 Feature: domain Description: PRK05658 Location: 696057-697896 bp Feature: domain Description: PRK05658 Location: 696057-697896 bp Feature: gene Location: 714154-715446 bp Ori: AXL74791.1 Feature: domain Description: PRK10770 Location: 714244-715438 bp Feature: domain Description: PRK1 0770 Location: 71 4244-71 5438 bp Feature: gene Location: 715427-718198 bp Ori: AXL74792.1 Feature: domain Description: LptD Location: 715622-718184 bp Feature: domain Description: LptD Location: 71 5622-71 81 84 bp Feature: gene Location: 718331-719641 bp Ori: AXL74793.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718334-718910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 8334-71 891 0 bp Feature: domain Description: YkfC Location: 719120-719273 bp Feature: domain Description: YkfC Location: 71 91 20-71 9273 bp Feature: domain Description: HNH Note: nucleases Location: 719447-719585 bp Feature: domain Description: HNH Note: nucleases Location: 71 9447-71 9585 bp Feature: gene Location: 721316-722332 bp Ori: AXL74794.1 Feature: domain Description: COG3178 Location: 721319-722318 bp Feature: domain Description: COG31 78 Location: 721 31 9-72231 8 bp Feature: gene Location: 722329-723003 bp Ori: AXL74795.1 Feature: domain Description: NTP_transferase_like_1 Location: 722335-722974 bp Feature: domain Description: NTP_transferase_like_1 Location: 722335-722974 bp Feature: gene Location: 1189995-1190822 bp Ori: AXL75224.1 Feature: domain Description: ABC_phnC Location: 1190025-1190739 bp Feature: domain Description: ABC_phnC Location: 1 1 90025-1 1 90739 bp Feature: gene Location: 1191165-1191806 bp Ori: AXL75225.1 Feature: domain Description: DUF772 Location: 1191315-1191510 bp Feature: domain Description: DUF772 Location: 1 1 91 31 5-1 1 91 51 0 bp Feature: gene Location: 1192195-1193463 bp Ori: AXL75226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192408-1193065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 92408-1 1 93065 bp Feature: domain Description: GIIM Note: maturase Location: 1193143-1193365 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 931 43-1 1 93365 bp Feature: gene Location: 1195458-1197002 bp Ori: AXL75227.1 Feature: domain Description: CHD Location: 1195674-1196088 bp Feature: domain Description: CHD Location: 1 1 95674-1 1 96088 bp Feature: domain Description: CHD Location: 1196316-1196805 bp Feature: domain Description: CHD Location: 1 1 9631 6-1 1 96805 bp Feature: gene Location: 1197083-1198009 bp Ori: AXL75228.1 Feature: domain Description: COG4271 Location: 1197323-1197992 bp Feature: domain Description: COG4271 Location: 1 1 97323-1 1 97992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain )