myRT

myRT report for GCA_003382705.1_ASM338270v1

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Seq: CP031286.1 Escherichia fergusonii strain 40A plasmid p80_40A, complete sequence (79635 bp)
Overview 1 RT 1: 44793-47145 bp Neighborhood of RT #1 [44793, 47145] RVT_N RVT-GII Feature: gene Location: 44793-44988 bp Feature: gene Location: 45251-45562 bp Ori: AXM04913.1 Feature: domain Description: RVT_N Location: 45263-45467 bp Feature: domain Description: RVT_N Location: 45263-45467 bp Feature: gene Location: 45574-46846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45577-46159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45577-461 59 bp Feature: gene Location: 46824-47009 bp Feature: gene Location: 47047-47145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CP031283.1 Escherichia fergusonii strain 40A plasmid p150_40A, complete sequence (148340 bp)
Overview 1 RT 1: 122122-125816 bp 2 RT 2: 133387-137058 bp Neighborhood of RT #1 [122122, 125964] RVT_N RVT-GII RVT-GII ArdA DUF1472 Neighborhood of RT #2 [133387, 137058] RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 122122-122454 bp Feature: gene Location: 122873-123121 bp Feature: gene Location: 123163-123918 bp Ori: AXM04729.1 Feature: domain Description: RVT_N Location: 123211-123448 bp Feature: domain Description: RVT_N Location: 12 32 11-12 3448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123499-123874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3499-12 3874 bp Feature: gene Location: 123918-124827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123939-124134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3939-12 4134 bp Feature: gene Location: 125107-125607 bp Ori: AXM04730.1 Feature: domain Description: ArdA Location: 125131-125596 bp Feature: domain Description: ArdA Location: 12 5131-12 5596 bp Feature: gene Location: 125528-125964 bp Feature: domain Description: DUF1472 Location: 125639-125816 bp Feature: domain Description: DUF1472 Location: 12 5639-12 5816 bp Feature: gene Location: 133387-133590 bp Feature: gene Location: 133753-133821 bp Feature: gene Location: 134541-135120 bp Feature: domain Description: RVT_N Location: 134589-134826 bp Feature: domain Description: RVT_N Location: 134589-13482 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134877-134925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134877-13492 5 bp Feature: gene Location: 135294-136199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135315-135477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135315-135477 bp Feature: domain Description: GIIM Note: maturase Location: 135660-135798 bp Feature: domain Description: GIIM Note: maturase Location: 135660-135798 bp Feature: domain Description: HNHc Note: nucleases Location: 136005-136164 bp Feature: domain Description: HNHc Note: nucleases Location: 136005-136164 bp Feature: gene Location: 136410-136652 bp Feature: gene Location: 136767-137058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, ArdA (pfam07275), DUF1472 (pfam07339), GIIM (pfam08388), HNHc (smart00507)

Seq: CP031282.1 Escherichia fergusonii strain 40A chromosome, complete genome (4515966 bp)
Overview 1 RT 1: 3639587-3642998 bp Neighborhood of RT #1 [3639587, 3643460] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 3639587-3640042 bp Ori: AXM04635.1 Feature: domain Description: dut Location: 3639590-3640037 bp Feature: domain Description: dut Location: 3 63 9590-3 64003 7 bp Feature: gene Location: 3640148-3640744 bp Ori: AXM04115.1 Feature: domain Description: slmA Location: 3640154-3640730 bp Feature: domain Description: slmA Location: 3 640154-3 64073 0 bp Feature: gene Location: 3640788-3641729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3640908-3641157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 640908-3 641157 bp Feature: gene Location: 3642040-3642680 bp Feature: domain Description: pyrE Location: 3642043-3642178 bp Feature: domain Description: pyrE Location: 3 642043 -3 642178 bp Feature: gene Location: 3642746-3643460 bp Feature: domain Description: rph Location: 3642749-3642998 bp Feature: domain Description: rph Location: 3 642749-3 642998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)