myRT

myRT report for GCA_003391395.1_ASM339139v1

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Seq: CP024190.1 Mycobacterium marinum strain CCUG20998 chromosome, complete genome (6453310 bp)
Overview 1 RT 1: 4125639-4131474 bp 2 RT 2: 5269997-5280514 bp Neighborhood of RT #1 [4125639, 4131575] YHI9 RVT-CRISPR-like RnaI Neighborhood of RT #2 [5269997, 5280525] InsE PHA02517 RVT-GII GIIM PHA02517 HTH_23 COG4584 PHA02517 INT_ICEBs1_C_like RVT-UG12 HTH_32 rve PE PE_PPE_C Feature: gene Location: 4125639-4126055 bp Feature: gene Location: 4126135-4126977 bp Ori: AXN50817.1 Gene: phzF Feature: domain Description: YHI9 Location: 4126147-4126969 bp Feature: domain Description: YHI9 Location: 41 261 47-41 26969 bp Feature: gene Location: 4127214-4128545 bp Ori: AXN50818.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4127454-4128075 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 41 27454-41 28075 bp Feature: gene Location: 4128538-4130673 bp Feature: gene Location: 4130793-4131575 bp Ori: AXN50820.1 Feature: domain Description: RnaI Location: 4130895-4131474 bp Feature: domain Description: RnaI Location: 41 30895-41 31 474 bp Feature: gene Location: 5269997-5270290 bp Ori: AXN51805.1 Feature: domain Description: InsE Location: 5270006-5270273 bp Feature: domain Description: InsE Location: 5270006-5270273 bp Feature: gene Location: 5270287-5270760 bp Ori: AXN51806.1 Feature: domain Description: PHA02517 Location: 5270356-5270686 bp Feature: domain Description: PHA0251 7 Location: 5270356-5270686 bp Feature: gene Location: 5271292-5272740 bp Ori: AXN51807.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5271610-5272297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5271 61 0-5272297 bp Feature: domain Description: GIIM Note: maturase Location: 5272372-5272567 bp Feature: domain Description: GIIM Note: maturase Location: 5272372-5272567 bp Feature: gene Location: 5272698-5273024 bp Ori: AXN51808.1 Feature: domain Description: PHA02517 Location: 5272863-5273001 bp Feature: domain Description: PHA0251 7 Location: 5272863-5273001 bp Feature: gene Location: 5273166-5274683 bp Ori: AXN51809.1 Feature: domain Description: HTH_23 Location: 5273172-5273307 bp Feature: domain Description: HTH_23 Location: 52731 72-5273307 bp Feature: domain Description: COG4584 Location: 5273439-5274030 bp Feature: domain Description: COG4584 Location: 5273439-5274030 bp Feature: gene Location: 5275575-5275889 bp Ori: AXN51811.1 Feature: domain Description: PHA02517 Location: 5275578-5275869 bp Feature: domain Description: PHA0251 7 Location: 5275578-5275869 bp Feature: gene Location: 5276023-5276259 bp Ori: AXN51812.1 Gene: xerC_5 Feature: domain Description: INT_ICEBs1_C_like Location: 5276029-5276161 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 5276029-52761 61 bp Feature: gene Location: 5276302-5277537 bp Ori: AXN51813.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5276335-5276767 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 5276335-5276767 bp Feature: gene Location: 5278180-5279151 bp Ori: AXN51814.1 Feature: domain Description: HTH_32 Location: 5278300-5278519 bp Feature: domain Description: HTH_32 Location: 5278300-527851 9 bp Feature: domain Description: rve Location: 5278600-5278984 bp Feature: domain Description: rve Location: 5278600-5278984 bp Feature: gene Location: 5279701-5280525 bp Ori: AXN51815.1 Feature: domain Description: PE Location: 5279704-5279977 bp Feature: domain Description: PE Location: 5279704-5279977 bp Feature: domain Description: PE_PPE_C Location: 5280274-5280514 bp Feature: domain Description: PE_PPE_C Location: 5280274-528051 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_23 (pfam13384), COG4584 (Transposase ), INT_ICEBs1_C_like (cd01189)
RVT-UG12, HTH_32 (pfam13565), rve (pfam00665), PE (pfam00934), PE_PPE_C (pfam12484)