myRT

myRT report for GCA_003399575.2_ASM339957v2

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Seq: CP034673.1 Vibrio anguillarum strain J360 chromosome 2, complete sequence (1172081 bp)
Overview 1 RT 1: 455324-461107 bp 2 RT 2: 938287-944230 bp Neighborhood of RT #1 [455324, 461118] PRK12440 RVT_N RVT-GII GIIM PRK10216 PRK10473 Neighborhood of RT #2 [938287, 944292] PRK10070 PRK10952 RVT_N RVT-GII GIIM proX MarR Feature: gene Location: 455324-456517 bp Ori: AZS26838.1 Feature: domain Description: PRK12440 Location: 455327-456515 bp Feature: domain Description: PRK1 2440 Location: 455327-45651 5 bp Feature: gene Location: 456692-456889 bp Feature: gene Location: 456805-458277 bp Ori: AZS26839.1 Gene: ltrA Feature: domain Description: RVT_N Location: 456853-457096 bp Feature: domain Description: RVT_N Location: 456853-457096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457141-457768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4571 41 -457768 bp Feature: domain Description: GIIM Note: maturase Location: 457831-458053 bp Feature: domain Description: GIIM Note: maturase Location: 457831 -458053 bp Feature: gene Location: 458979-459935 bp Ori: AZS26840.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 458982-459927 bp Feature: domain Description: PRK1 021 6 Location: 458982-459927 bp Feature: gene Location: 459910-461118 bp Ori: AZS27454.1 Feature: domain Description: PRK10473 Location: 459934-461107 bp Feature: domain Description: PRK1 0473 Location: 459934-461 1 07 bp Feature: gene Location: 938287-939474 bp Ori: AZS27270.1 Gene: proV Feature: domain Description: PRK10070 Location: 938299-939472 bp Feature: domain Description: PRK1 0070 Location: 938299-939472 bp Feature: gene Location: 939477-940580 bp Ori: AZS27271.1 Gene: proW Feature: domain Description: PRK10952 Location: 939510-940518 bp Feature: domain Description: PRK1 0952 Location: 93951 0-94051 8 bp Feature: gene Location: 940683-942155 bp Ori: AZS27272.1 Gene: ltrA Feature: domain Description: RVT_N Location: 940731-940974 bp Feature: domain Description: RVT_N Location: 940731 -940974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941019-941646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 01 9-941 646 bp Feature: domain Description: GIIM Note: maturase Location: 941703-941931 bp Feature: domain Description: GIIM Note: maturase Location: 941 703-941 931 bp Feature: gene Location: 942748-943755 bp Ori: AZS27273.1 Gene: proX Feature: domain Description: proX Location: 942781-943753 bp Feature: domain Description: proX Location: 942781 -943753 bp Feature: gene Location: 943762-944292 bp Ori: AZS27274.1 Feature: domain Description: MarR Location: 943846-944230 bp Feature: domain Description: MarR Location: 943846-944230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12440 (acetate/propionate family kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10070 (proline/glycine betaine ABC transporter ATP-binding protein ProV), PRK10952 (proline/glycine betaine ABC transporter permease ProW), proX (PRK11119), MarR (pfam01047)

Seq: CP034672.1 Vibrio anguillarum strain J360 chromosome 1, complete sequence (3320860 bp)
Overview 1 RT 1: 1270597-1276485 bp 2 RT 2: 3001878-3008552 bp Neighborhood of RT #1 [1270597, 1276487] YegP RVT_N RVT-GII GIIM HNHc groEL groES Neighborhood of RT #2 [3001878, 3008572] xerC INT_tnpB_C_Tn554 RVT_N RVT-GII GIIM PHA01082 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1270597-1271154 bp Feature: gene Location: 1271459-1271611 bp Ori: AZS24652.1 Feature: domain Description: YegP Location: 1271462-1271579 bp Feature: domain Description: YegP Location: 12 71462 -12 71579 bp Feature: gene Location: 1271718-1273370 bp Ori: AZS24653.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1271763-1272003 bp Feature: domain Description: RVT_N Location: 12 71763-12 72 003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272051-1272696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 72 051-12 72 696 bp Feature: domain Description: GIIM Note: maturase Location: 1272747-1272981 bp Feature: domain Description: GIIM Note: maturase Location: 12 72 747-12 72 981 bp Feature: domain Description: HNHc Note: nucleases Location: 1273197-1273359 bp Feature: domain Description: HNHc Note: nucleases Location: 12 73197-12 73359 bp Feature: gene Location: 1274493-1276127 bp Ori: AZS24654.1 Gene: groL Feature: domain Description: groEL Location: 1274499-1276116 bp Feature: domain Description: groEL Location: 12 74499-12 76116 bp Feature: gene Location: 1276197-1276487 bp Ori: AZS24655.1 Feature: domain Description: groES Location: 1276200-1276485 bp Feature: domain Description: groES Location: 12 762 00-12 76485 bp Feature: gene Location: 3001878-3003680 bp Ori: AZS26058.1 Feature: domain Description: xerC Location: 3002037-3002274 bp Feature: domain Description: xerC Location: 3002 037-3002 2 74 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 3002646-3003174 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 3002 646-3003174 bp Feature: gene Location: 3003673-3004080 bp Feature: gene Location: 3004351-3005823 bp Ori: AZS26060.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3004399-3004642 bp Feature: domain Description: RVT_N Location: 3004399-3004642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3004687-3005314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3004687-3005314 bp Feature: domain Description: GIIM Note: maturase Location: 3005371-3005599 bp Feature: domain Description: GIIM Note: maturase Location: 3005371-3005599 bp Feature: gene Location: 3006578-3006949 bp Ori: AZS26061.1 Feature: domain Description: PHA01082 Location: 3006581-3006941 bp Feature: domain Description: PHA01082 Location: 3006581-3006941 bp Feature: gene Location: 3007040-3008572 bp Ori: AZS26062.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3007154-3007355 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3007154-3007355 bp Feature: domain Description: zf-IS66 Location: 3007382-3007514 bp Feature: domain Description: zf-IS66 Location: 3007382 -3007514 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3007574-3008423 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3007574-300842 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3008444-3008552 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3008444-3008552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YegP (COG3422), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533), xerC (PRK01287), INT_tnpB_C_Tn554 (cd01187), PHA01082 (putative transcription regulator)
LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)