myRT

myRT report for GCA_003402955.1_ASM340295v1

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Seq: CP031548.1 Escherichia coli strain cq9 plasmid unnamed2, complete sequence (221041 bp)
Overview 1 RT 1: 156691-159540 bp Neighborhood of RT #1 [156691, 159545] RVT-GII GIIM HNHc HTH_23 InsE TnpB_IS66 Feature: gene Location: 156691-156795 bp Feature: gene Location: 156792-157103 bp Feature: gene Location: 157333-158670 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157336-157948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57336-1 57948 bp Feature: domain Description: GIIM Note: maturase Location: 157999-158233 bp Feature: domain Description: GIIM Note: maturase Location: 1 57999-1 58233 bp Feature: domain Description: HNHc Note: nucleases Location: 158464-158614 bp Feature: domain Description: HNHc Note: nucleases Location: 1 58464-1 5861 4 bp Feature: gene Location: 158755-159405 bp Ori: AXO10256.1 Feature: domain Description: HTH_23 Location: 158806-158905 bp Feature: domain Description: HTH_23 Location: 1 58806-1 58905 bp Feature: domain Description: InsE Location: 159034-159382 bp Feature: domain Description: InsE Location: 1 59034-1 59382 bp Feature: gene Location: 159405-159545 bp Feature: domain Description: TnpB_IS66 Location: 159432-159540 bp Feature: domain Description: TnpB_IS66 Location: 1 59432-1 59540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: CP031546.1 Escherichia coli strain cq9 chromosome, complete genome (5184499 bp)
Overview 1 RT 1: 3863293-3872313 bp 2 RT 2: 5051326-5055205 bp Neighborhood of RT #1 [3863293, 3872708] InsE RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #2 [5051326, 5055210] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 3863293-3864032 bp Feature: domain Description: InsE Location: 3863296-3863632 bp Feature: domain Description: InsE Location: 38632 96-3863632 bp Feature: gene Location: 3864025-3864396 bp Feature: gene Location: 3864690-3866213 bp Ori: AXO08437.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864963-3865695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864963-3865695 bp Feature: domain Description: GIIM Note: maturase Location: 3865770-3865968 bp Feature: domain Description: GIIM Note: maturase Location: 3865770-3865968 bp Feature: gene Location: 3866294-3866746 bp Feature: domain Description: PHA02517 Location: 3866297-3866741 bp Feature: domain Description: PHA02 517 Location: 38662 97-3866741 bp Feature: gene Location: 3866973-3872708 bp Ori: AXO08438.1 Feature: domain Description: DUF4011 Location: 3867063-3867897 bp Feature: domain Description: DUF4011 Location: 3867063-3867897 bp Feature: domain Description: DEXXQc_SF1 Location: 3868254-3871356 bp Feature: domain Description: DEXXQc_SF1 Location: 38682 54-3871356 bp Feature: domain Description: SF1_C_Upf1 Location: 3871365-3871893 bp Feature: domain Description: SF1_C_Upf1 Location: 3871365-3871893 bp Feature: domain Description: MTES_1575 Location: 3872022-3872313 bp Feature: domain Description: MTES_1575 Location: 3872 02 2 -3872 313 bp Feature: gene Location: 5051326-5051781 bp Ori: AXO09864.1 Feature: domain Description: dut Location: 5051329-5051776 bp Feature: domain Description: dut Location: 505132 9-5051776 bp Feature: gene Location: 5051888-5052484 bp Ori: AXO09551.1 Gene: slmA Feature: domain Description: slmA Location: 5051894-5052470 bp Feature: domain Description: slmA Location: 5051894-5052 470 bp Feature: gene Location: 5052530-5053489 bp Ori: AXO09552.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5052665-5053214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5052 665-50532 14 bp Feature: gene Location: 5053787-5054428 bp Ori: AXO09553.1 Feature: domain Description: pyrE Location: 5053790-5054423 bp Feature: domain Description: pyrE Location: 5053790-505442 3 bp Feature: gene Location: 5054494-5055210 bp Ori: AXO09554.1 Feature: domain Description: rph Location: 5054497-5055205 bp Feature: domain Description: rph Location: 5054497-50552 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), dut (TIGR00576), slmA (PRK09480)
RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)