myRT

myRT report for GCA_003403135.1_ASM340313v1

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Seq: CP031560.1 Dickeya dianthicola strain ME23 chromosome, complete genome (4909058 bp)
Overview 1 RT 1: 468747-473129 bp 2 RT 2: 1010720-1015302 bp Neighborhood of RT #1 [468747, 473134] COG4737 YiaG RVT-Retrons Gp49 HTH_37 Neighborhood of RT #2 [1010720, 1015310] PRK09010 RVT-GII Intron_maturas2 HNHc DUF29 Feature: gene Location: 468747-469031 bp Ori: AYC17340.1 Feature: domain Description: COG4737 Location: 468750-469023 bp Feature: domain Description: COG4737 Location: 468750-469023 bp Feature: gene Location: 469082-469405 bp Ori: AYC17341.1 Gene: higA-2 Feature: domain Description: YiaG Location: 469097-469400 bp Feature: domain Description: YiaG Location: 469097-469400 bp Feature: gene Location: 469692-471419 bp Ori: AYC17342.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 469830-470457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 469830-470457 bp Feature: gene Location: 472540-472860 bp Ori: AYC17343.1 Feature: domain Description: Gp49 Location: 472579-472840 bp Feature: domain Description: Gp49 Location: 472579-472840 bp Feature: gene Location: 472850-473134 bp Ori: AYC17344.1 Gene: higA1 Feature: domain Description: HTH_37 Location: 472958-473129 bp Feature: domain Description: HTH_37 Location: 472958-4731 29 bp Feature: gene Location: 1010720-1010947 bp Feature: gene Location: 1011026-1011508 bp Ori: AYC17848.1 Gene: ssb_1 Feature: domain Description: PRK09010 Location: 1011029-1011506 bp Feature: domain Description: PRK0901 0 Location: 1 01 1 029-1 01 1 506 bp Feature: gene Location: 1012480-1014003 bp Ori: AYC17849.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012486-1013248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 2486-1 01 3248 bp Feature: domain Description: Intron_maturas2 Location: 1013359-1013638 bp Feature: domain Description: Intron_maturas2 Location: 1 01 3359-1 01 3638 bp Feature: domain Description: HNHc Note: nucleases Location: 1013779-1013956 bp Feature: domain Description: HNHc Note: nucleases Location: 1 01 3779-1 01 3956 bp Feature: gene Location: 1014020-1014739 bp Feature: gene Location: 1014879-1015310 bp Ori: AYC17851.1 Feature: domain Description: DUF29 Location: 1014894-1015302 bp Feature: domain Description: DUF29 Location: 1 01 4894-1 01 5302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4737 (Uncharacterized protein ), YiaG (COG2944), RVT-Retrons, Gp49 (pfam05973), HTH_37 (pfam13744), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF29 (pfam01724)