myRT

myRT report for GCA_003408495.1_ASM340849v1

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Seq: CP030911.1 Pseudomonas aeruginosa strain Y71 chromosome, complete genome (6940949 bp)
Overview 1 RT 1: 682371-692704 bp 2 RT 2: 708962-717129 bp Neighborhood of RT #1 [682371, 692706] HTH_XRE RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [708962, 717143] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 682371-682601 bp Feature: gene Location: 682699-682938 bp Ori: AXO26614.1 Feature: domain Description: HTH_XRE Location: 682711-682855 bp Feature: domain Description: HTH_XRE Location: 68271 1 -682855 bp Feature: gene Location: 684243-685928 bp Ori: AXO26615.1 Feature: domain Description: RVT_N Location: 684300-684540 bp Feature: domain Description: RVT_N Location: 684300-684540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684588-685224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684588-685224 bp Feature: domain Description: GIIM Note: maturase Location: 685278-685509 bp Feature: domain Description: GIIM Note: maturase Location: 685278-685509 bp Feature: domain Description: HNH Note: nucleases Location: 685761-685899 bp Feature: domain Description: HNH Note: nucleases Location: 685761 -685899 bp Feature: gene Location: 687009-690746 bp Ori: AXO26616.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 687117-687774 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6871 1 7-687774 bp Feature: domain Description: PRK09776 Location: 687987-688458 bp Feature: domain Description: PRK09776 Location: 687987-688458 bp Feature: domain Description: PAS Location: 688530-689040 bp Feature: domain Description: PAS Location: 688530-689040 bp Feature: domain Description: PRK10060 Location: 689049-690696 bp Feature: domain Description: PRK1 0060 Location: 689049-690696 bp Feature: gene Location: 690853-692706 bp Ori: AXO26617.1 Feature: domain Description: PRK05658 Location: 690865-692704 bp Feature: domain Description: PRK05658 Location: 690865-692704 bp Feature: gene Location: 708962-710254 bp Ori: AXO26635.1 Feature: domain Description: PRK10770 Location: 709052-710246 bp Feature: domain Description: PRK1 0770 Location: 709052-71 0246 bp Feature: gene Location: 710235-713009 bp Ori: AXO26636.1 Feature: domain Description: LptD Location: 710430-712995 bp Feature: domain Description: LptD Location: 71 0430-71 2995 bp Feature: gene Location: 713142-714452 bp Ori: AXO26637.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713145-713721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 31 45-71 3721 bp Feature: domain Description: YkfC Location: 713931-714084 bp Feature: domain Description: YkfC Location: 71 3931 -71 4084 bp Feature: domain Description: HNH Note: nucleases Location: 714258-714396 bp Feature: domain Description: HNH Note: nucleases Location: 71 4258-71 4396 bp Feature: gene Location: 715696-715830 bp Feature: gene Location: 716127-717143 bp Ori: AXO26639.1 Feature: domain Description: COG3178 Location: 716130-717129 bp Feature: domain Description: COG31 78 Location: 71 61 30-71 71 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )