myRT

myRT report for GCA_003408615.1_ASM340861v1

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Seq: CP031582.1 Klebsiella pneumoniae strain S12 plasmid pIncHI1B-1502320, complete sequence (206229 bp)
Overview 1 RT 1: 28406-32832 bp 2 RT 2: 88642-92501 bp Neighborhood of RT #1 [28406, 32834] PHA02517 RVT-GII GIIM PHA02517 PFDH_like Neighborhood of RT #2 [88642, 92501] HHA RVT-GII INT_Cre_C Feature: gene Location: 28406-28747 bp Feature: domain Description: PHA02517 Location: 28412-28748 bp Feature: domain Description: PHA0251 7 Location: 2841 2-28748 bp Feature: gene Location: 28716-29138 bp Feature: gene Location: 29401-30924 bp Ori: AXO58459.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29674-30406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29674-30406 bp Feature: domain Description: GIIM Note: maturase Location: 30484-30679 bp Feature: domain Description: GIIM Note: maturase Location: 30484-30679 bp Feature: gene Location: 31005-31468 bp Feature: domain Description: PHA02517 Location: 31008-31257 bp Feature: domain Description: PHA0251 7 Location: 31 008-31 257 bp Feature: gene Location: 31701-32834 bp Ori: AXO58460.1 Feature: domain Description: PFDH_like Location: 31704-32832 bp Feature: domain Description: PFDH_like Location: 31 704-32832 bp Feature: gene Location: 88642-88896 bp Ori: AXO58498.1 Feature: domain Description: HHA Location: 88693-88876 bp Feature: domain Description: HHA Location: 88693-88876 bp Feature: gene Location: 89162-89413 bp Feature: gene Location: 89413-90897 bp Ori: AXO58500.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89815-90505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8981 5-90505 bp Feature: gene Location: 90982-92118 bp Ori: AXO58501.1 Feature: domain Description: INT_Cre_C Location: 91405-92059 bp Feature: domain Description: INT_Cre_C Location: 91 405-92059 bp Feature: gene Location: 92184-92501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PFDH_like (cd08282), HHA (pfam05321), INT_Cre_C (cd00799)

Seq: CP031577.1 Klebsiella pneumoniae strain S12 chromosome, complete genome (5242834 bp)
Overview 1 RT 1: 183489-187588 bp 2 RT 2: 1006318-1009322 bp 3 RT 3: 2509291-2513230 bp Neighborhood of RT #1 [183489, 187599] umuC PRK10276 RVT-GII DinI Neighborhood of RT #2 [1006318, 1009322] PRK10276 RVT-GII Neighborhood of RT #3 [2509291, 2513438] Psu RVT-UG17 SLATT_5 PRK09692 PRK09692 Feature: gene Location: 183489-184754 bp Ori: AXO53430.1 Gene: umuC Feature: domain Description: umuC Location: 183492-184752 bp Feature: domain Description: umuC Location: 183492 -184752 bp Feature: gene Location: 184757-185176 bp Ori: AXO53431.1 Feature: domain Description: PRK10276 Location: 184760-185171 bp Feature: domain Description: PRK102 76 Location: 184760-185171 bp Feature: gene Location: 185255-186739 bp Ori: AXO53432.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185657-186347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185657-186347 bp Feature: gene Location: 186739-186990 bp Feature: gene Location: 187357-187599 bp Ori: AXO53434.1 Feature: domain Description: DinI Location: 187408-187588 bp Feature: domain Description: DinI Location: 187408-187588 bp Feature: gene Location: 1006318-1006635 bp Ori: AXO54158.1 Feature: domain Description: PRK10276 Location: 1006324-1006444 bp Feature: domain Description: PRK102 76 Location: 100632 4-1006444 bp Feature: gene Location: 1006635-1006874 bp Feature: gene Location: 1006952-1008436 bp Ori: AXO54160.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007354-1008044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007354-1008044 bp Feature: gene Location: 1008436-1008687 bp Feature: gene Location: 1009233-1009322 bp Feature: gene Location: 2509291-2509840 bp Feature: domain Description: Psu Location: 2509309-2509690 bp Feature: domain Description: Psu Location: 2 509309-2 509690 bp Feature: gene Location: 2509850-2509985 bp Feature: gene Location: 2510167-2511576 bp Ori: AXO55508.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2510404-2511016 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 510404-2 511016 bp Feature: gene Location: 2511675-2512412 bp Ori: AXO55509.1 Feature: domain Description: SLATT_5 Location: 2511774-2512377 bp Feature: domain Description: SLATT_5 Location: 2 511774-2 512 377 bp Feature: gene Location: 2512465-2513438 bp Feature: domain Description: PRK09692 Location: 2512474-2512837 bp Feature: domain Description: PRK09692 Location: 2 512 474-2 512 837 bp Feature: domain Description: PRK09692 Location: 2512858-2513230 bp Feature: domain Description: PRK09692 Location: 2 512 858-2 5132 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: CP031580.1 Klebsiella pneumoniae strain S12 plasmid p1502320-3 (86800 bp)
Overview 1 RT 1: 9241-13760 bp Neighborhood of RT #1 [9241, 13768] InsQ RVT-GII PRK10276 umuC Feature: gene Location: 9241-9810 bp Feature: domain Description: InsQ Location: 9250-9760 bp Feature: domain Description: InsQ Location: 9250-9760 bp Feature: gene Location: 10254-10505 bp Feature: gene Location: 10505-11989 bp Ori: AXO58300.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10907-11597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10907-11597 bp Feature: gene Location: 12075-12497 bp Ori: AXO58301.1 Feature: domain Description: PRK10276 Location: 12081-12483 bp Feature: domain Description: PRK10276 Location: 12081-12483 bp Feature: gene Location: 12497-13768 bp Ori: AXO58302.1 Gene: umuC Feature: domain Description: umuC Location: 12500-13760 bp Feature: domain Description: umuC Location: 12500-13 760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP031583.1 Klebsiella pneumoniae strain S12 plasmid pIncFII-1502320, complete sequence (198719 bp)
Overview 1 RT 1: 73116-76196 bp Neighborhood of RT #1 [73116, 76210] DUF1472 RVT-GII PRK10276 Feature: gene Location: 73116-73208 bp Feature: domain Description: DUF1472 Location: 73128-73194 bp Feature: domain Description: DUF14 72 Location: 73128-73194 bp Feature: gene Location: 73432-73662 bp Feature: gene Location: 73895-75379 bp Ori: AXO58685.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74297-74987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 297-74 987 bp Feature: gene Location: 75379-75630 bp Feature: gene Location: 75785-76210 bp Ori: AXO58687.1 Feature: domain Description: PRK10276 Location: 75788-76196 bp Feature: domain Description: PRK10276 Location: 75788-76196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1472 (pfam07339), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)