myRT

myRT report for GCA_003428805.1_ASM342880v1

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Seq: CP031729.1 Stenotrophomonas rhizophila strain GA1 chromosome, complete genome (5929188 bp)
Overview 1 RT 1: 44501-49642 bp 2 RT 2: 317145-322778 bp 3 RT 3: 2927568-2933071 bp 4 RT 4: 2940171-2944922 bp 5 RT 5: 3611486-3615618 bp 6 RT 6: 3927070-3931064 bp 7 RT 7: 4235399-4239601 bp 8 RT 8: 5528718-5532611 bp Neighborhood of RT #1 [44501, 49642] cztR_silR_copR cztS_silS_copS RVT-GII GIIM Neighborhood of RT #2 [317145, 322852] CysW CysA RVT-GII GIIM TonB TolQ Neighborhood of RT #3 [2927568, 2933071] HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #4 [2940171, 2944922] CaiB PRK13348 PBP2_LTTR_like_1 RVT-Retrons Neighborhood of RT #5 [3611486, 3615686] AraC_binding AraC RVT-GII GIIM COG2847 SCO Neighborhood of RT #6 [3927070, 3931075] lyz_P1 Phage_holin_2_4 RVT-GII GIIM Phage_antitermQ NinG Neighborhood of RT #7 [4235399, 4239747] RVT-GII GIIM MdoB Neighborhood of RT #8 [5528718, 5532646] RVT-GII GIIM GABAperm Feature: gene Location: 44501-45175 bp Ori: AXQ46176.1 Feature: domain Description: cztR_silR_copR Location: 44510-45161 bp Feature: domain Description: cztR_silR_copR Location: 4451 0-451 61 bp Feature: gene Location: 45172-46590 bp Ori: AXQ46177.1 Feature: domain Description: cztS_silS_copS Location: 45181-46552 bp Feature: domain Description: cztS_silS_copS Location: 451 81 -46552 bp Feature: gene Location: 47064-48485 bp Ori: AXQ46178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47421-48036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47421 -48036 bp Feature: domain Description: GIIM Note: maturase Location: 48093-48306 bp Feature: domain Description: GIIM Note: maturase Location: 48093-48306 bp Feature: gene Location: 48567-49154 bp Feature: gene Location: 49421-49642 bp Feature: gene Location: 317145-318017 bp Ori: AXQ46347.1 Gene: cysW Feature: domain Description: CysW Location: 317175-317997 bp Feature: domain Description: CysW Location: 31 71 75-31 7997 bp Feature: gene Location: 318021-319010 bp Ori: AXQ46348.1 Gene: cysA Feature: domain Description: CysA Location: 318024-318999 bp Feature: domain Description: CysA Location: 31 8024-31 8999 bp Feature: gene Location: 319486-320907 bp Ori: AXQ46349.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319843-320458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9843-320458 bp Feature: domain Description: GIIM Note: maturase Location: 320515-320728 bp Feature: domain Description: GIIM Note: maturase Location: 32051 5-320728 bp Feature: gene Location: 321314-322102 bp Ori: AXQ46350.1 Feature: domain Description: TonB Location: 321524-322097 bp Feature: domain Description: TonB Location: 321 524-322097 bp Feature: gene Location: 322133-322852 bp Ori: AXQ46351.1 Feature: domain Description: TolQ Location: 322166-322778 bp Feature: domain Description: TolQ Location: 3221 66-322778 bp Feature: gene Location: 2927568-2928499 bp Feature: gene Location: 2929023-2929136 bp Ori: AXQ48196.1 Feature: domain Description: HTH_Tnp_1 Location: 2929026-2929113 bp Feature: domain Description: HTH_Tnp_1 Location: 2929026-29291 1 3 bp Feature: gene Location: 2929328-2930749 bp Ori: AXQ48197.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929685-2930300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929685-2930300 bp Feature: domain Description: GIIM Note: maturase Location: 2930357-2930570 bp Feature: domain Description: GIIM Note: maturase Location: 2930357-2930570 bp Feature: gene Location: 2931340-2932268 bp Feature: gene Location: 2932925-2933071 bp Feature: gene Location: 2940171-2941375 bp Feature: domain Description: CaiB Location: 2940201-2940771 bp Feature: domain Description: CaiB Location: 2940201 -2940771 bp Feature: gene Location: 2941547-2942467 bp Ori: AXQ48203.1 Feature: domain Description: PRK13348 Location: 2941559-2941769 bp Feature: domain Description: PRK1 3348 Location: 2941 559-2941 769 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 2941832-2942423 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 2941 832-2942423 bp Feature: gene Location: 2943417-2944160 bp Ori: AXQ48204.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2943420-2943888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2943420-2943888 bp Feature: gene Location: 2944577-2944714 bp Feature: gene Location: 2944753-2944922 bp Feature: gene Location: 3611486-3612319 bp Ori: AXQ48694.1 Feature: domain Description: AraC_binding Location: 3611540-3611915 bp Feature: domain Description: AraC_binding Location: 361 1 540-361 1 91 5 bp Feature: domain Description: AraC Location: 3612008-3612305 bp Feature: domain Description: AraC Location: 361 2008-361 2305 bp Feature: gene Location: 3612394-3612621 bp Feature: gene Location: 3612704-3614125 bp Ori: AXQ48696.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613061-3613676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 3061 -361 3676 bp Feature: domain Description: GIIM Note: maturase Location: 3613733-3613946 bp Feature: domain Description: GIIM Note: maturase Location: 361 3733-361 3946 bp Feature: gene Location: 3614590-3615078 bp Ori: AXQ48697.1 Feature: domain Description: COG2847 Location: 3614653-3615055 bp Feature: domain Description: COG2847 Location: 361 4653-361 5055 bp Feature: gene Location: 3615078-3615686 bp Ori: AXQ48698.1 Feature: domain Description: SCO Location: 3615213-3615618 bp Feature: domain Description: SCO Location: 361 521 3-361 561 8 bp Feature: gene Location: 3927070-3927582 bp Ori: AXQ48906.1 Feature: domain Description: lyz_P1 Location: 3927112-3927568 bp Feature: domain Description: lyz_P1 Location: 39271 1 2-3927568 bp Feature: gene Location: 3927569-3927862 bp Ori: AXQ48907.1 Feature: domain Description: Phage_holin_2_4 Location: 3927599-3927797 bp Feature: domain Description: Phage_holin_2_4 Location: 3927599-3927797 bp Feature: gene Location: 3928013-3929434 bp Ori: AXQ48908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928370-3928985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928370-3928985 bp Feature: domain Description: GIIM Note: maturase Location: 3929042-3929255 bp Feature: domain Description: GIIM Note: maturase Location: 3929042-3929255 bp Feature: gene Location: 3929950-3930318 bp Ori: AXQ48909.1 Feature: domain Description: Phage_antitermQ Location: 3929974-3930292 bp Feature: domain Description: Phage_antitermQ Location: 3929974-3930292 bp Feature: gene Location: 3930473-3931075 bp Ori: AXQ48910.1 Feature: domain Description: NinG Location: 3930485-3931064 bp Feature: domain Description: NinG Location: 3930485-3931 064 bp Feature: gene Location: 4235399-4235635 bp Feature: gene Location: 4235666-4235863 bp Feature: gene Location: 4235786-4237207 bp Ori: AXQ49144.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4236143-4236758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42361 43-4236758 bp Feature: domain Description: GIIM Note: maturase Location: 4236815-4237028 bp Feature: domain Description: GIIM Note: maturase Location: 423681 5-4237028 bp Feature: gene Location: 4237234-4237530 bp Feature: gene Location: 4237690-4239747 bp Ori: AXQ49146.1 Feature: domain Description: MdoB Location: 4237777-4239601 bp Feature: domain Description: MdoB Location: 4237777-4239601 bp Feature: gene Location: 5528718-5529161 bp Feature: gene Location: 5529168-5529431 bp Feature: gene Location: 5529354-5530775 bp Ori: AXQ50127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5529711-5530326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552971 1 -5530326 bp Feature: domain Description: GIIM Note: maturase Location: 5530383-5530596 bp Feature: domain Description: GIIM Note: maturase Location: 5530383-5530596 bp Feature: gene Location: 5530802-5531098 bp Feature: gene Location: 5531261-5532646 bp Ori: AXQ50129.1 Gene: gabP Feature: domain Description: GABAperm Location: 5531276-5532611 bp Feature: domain Description: GABAperm Location: 5531 276-553261 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cztR_silR_copR (TIGR01387), cztS_silS_copS (TIGR01386), RVT-GII, GIIM (pfam08388), CysW (COG4208), CysA (COG1118), TonB (COG0810), TolQ (COG0811), HTH_Tnp_1 (pfam01527), CaiB (COG1804)
PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421), RVT-Retrons, AraC_binding (pfam02311), AraC (COG2207), COG2847 (Copper(I)-binding protein ), SCO (cd02968), lyz_P1 (cd16901), Phage_holin_2_4 (pfam16082), Phage_antitermQ (pfam06530)
NinG (pfam05766), MdoB (COG1368), GABAperm (TIGR01773)

Seq: CP031732.1 Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence (265994 bp)
Overview 1 RT 1: 91158-97968 bp Neighborhood of RT #1 [91158, 98165] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 91158-91985 bp Ori: AXQ51099.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 91188-91902 bp Feature: domain Description: ABC_phnC Location: 91188-91902 bp Feature: gene Location: 92328-92838 bp Feature: domain Description: DUF772 Location: 92478-92673 bp Feature: domain Description: DUF772 Location: 92 478-92 673 bp Feature: gene Location: 93358-94626 bp Ori: AXQ51100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93571-94228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93571-942 2 8 bp Feature: domain Description: GIIM Note: maturase Location: 94306-94528 bp Feature: domain Description: GIIM Note: maturase Location: 94306-9452 8 bp Feature: gene Location: 94776-95102 bp Feature: gene Location: 96621-98165 bp Ori: AXQ51101.1 Feature: domain Description: CHD Location: 96837-97251 bp Feature: domain Description: CHD Location: 96837-972 51 bp Feature: domain Description: CHD Location: 97479-97968 bp Feature: domain Description: CHD Location: 97479-97968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)