myRT

myRT report for GCA_003428925.1_ASM342892v1

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Seq: CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome (7220839 bp)
Overview 1 RT 1: 483329-487164 bp 2 RT 2: 677104-681650 bp 3 RT 3: 2561616-2566309 bp 4 RT 4: 3276657-3280787 bp 5 RT 5: 3385705-3389992 bp 6 RT 6: 3600652-3608861 bp 7 RT 7: 4184968-4189196 bp Neighborhood of RT #1 [483329, 487166] DUF4096 RVT-GII GIIM HTH_Tnp_4 Neighborhood of RT #2 [677104, 681652] PnbA RVT-GII GIIM DUF4096 PnbA Neighborhood of RT #3 [2561616, 2566309] DUF664 DUF397 RVT_N RVT-GII GIIM HNH HTH_31 Neighborhood of RT #4 [3276657, 3280807] HTH_31 RVT_N RVT-GII GIIM HNH DUF397 DUF397 Neighborhood of RT #5 [3385705, 3389992] DUF397 DUF397 RVT_N RVT-GII GIIM HNH HTH_31 Neighborhood of RT #6 [3600652, 3609037] RVT-UNC HD_6 cas3_core Cas3_C CRISPR_Cse1 Neighborhood of RT #7 [4184968, 4189204] HTH_31 RVT_N RVT-GII GIIM HNH DUF397 DUF397 Feature: gene Location: 483329-483860 bp Feature: gene Location: 483918-484717 bp Feature: domain Description: DUF4096 Location: 483936-484149 bp Feature: domain Description: DUF4096 Location: 483936-4841 49 bp Feature: gene Location: 484848-486278 bp Ori: AXQ53527.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485169-485853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4851 69-485853 bp Feature: domain Description: GIIM Note: maturase Location: 485925-486159 bp Feature: domain Description: GIIM Note: maturase Location: 485925-4861 59 bp Feature: gene Location: 486359-486590 bp Feature: gene Location: 486981-487166 bp Feature: domain Description: HTH_Tnp_4 Location: 487074-487164 bp Feature: domain Description: HTH_Tnp_4 Location: 487074-4871 64 bp Feature: gene Location: 677104-678297 bp Feature: domain Description: PnbA Location: 677107-678169 bp Feature: domain Description: PnbA Location: 6771 07-6781 69 bp Feature: gene Location: 678684-678915 bp Feature: gene Location: 678996-680426 bp Ori: AXQ53633.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679317-680001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67931 7-680001 bp Feature: domain Description: GIIM Note: maturase Location: 680073-680307 bp Feature: domain Description: GIIM Note: maturase Location: 680073-680307 bp Feature: gene Location: 680626-681329 bp Feature: domain Description: DUF4096 Location: 680662-680872 bp Feature: domain Description: DUF4096 Location: 680662-680872 bp Feature: gene Location: 681356-681652 bp Ori: AXQ53634.1 Feature: domain Description: PnbA Location: 681365-681650 bp Feature: domain Description: PnbA Location: 681 365-681 650 bp Feature: gene Location: 2561616-2562134 bp Ori: AXQ55054.1 Feature: domain Description: DUF664 Location: 2561670-2562120 bp Feature: domain Description: DUF664 Location: 2561 670-25621 20 bp Feature: gene Location: 2562260-2562469 bp Ori: AXQ55055.1 Feature: domain Description: DUF397 Location: 2562281-2562446 bp Feature: domain Description: DUF397 Location: 2562281 -2562446 bp Feature: gene Location: 2562630-2564363 bp Ori: AXQ58912.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2562663-2562903 bp Feature: domain Description: RVT_N Location: 2562663-2562903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2562960-2563620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2562960-2563620 bp Feature: domain Description: GIIM Note: maturase Location: 2563674-2563905 bp Feature: domain Description: GIIM Note: maturase Location: 2563674-2563905 bp Feature: domain Description: HNH Note: nucleases Location: 2564229-2564331 bp Feature: domain Description: HNH Note: nucleases Location: 2564229-2564331 bp Feature: gene Location: 2564953-2565831 bp Ori: AXQ55056.1 Feature: domain Description: HTH_31 Location: 2565001-2565175 bp Feature: domain Description: HTH_31 Location: 2565001 -25651 75 bp Feature: gene Location: 2566103-2566309 bp Feature: gene Location: 3276657-3276866 bp Feature: gene Location: 3276973-3277860 bp Feature: domain Description: HTH_31 Location: 3277024-3277192 bp Feature: domain Description: HTH_31 Location: 3277024-32771 92 bp Feature: gene Location: 3278450-3280183 bp Ori: AXQ58960.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3278483-3278723 bp Feature: domain Description: RVT_N Location: 3278483-3278723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278780-3279440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278780-3279440 bp Feature: domain Description: GIIM Note: maturase Location: 3279494-3279725 bp Feature: domain Description: GIIM Note: maturase Location: 3279494-3279725 bp Feature: domain Description: HNH Note: nucleases Location: 3280049-3280151 bp Feature: domain Description: HNH Note: nucleases Location: 3280049-32801 51 bp Feature: gene Location: 3280344-3280550 bp Ori: AXQ55620.1 Feature: domain Description: DUF397 Location: 3280365-3280530 bp Feature: domain Description: DUF397 Location: 3280365-3280530 bp Feature: gene Location: 3280601-3280807 bp Ori: AXQ55621.1 Feature: domain Description: DUF397 Location: 3280622-3280787 bp Feature: domain Description: DUF397 Location: 3280622-3280787 bp Feature: gene Location: 3385705-3385914 bp Ori: AXQ55720.1 Feature: domain Description: DUF397 Location: 3385729-3385891 bp Feature: domain Description: DUF397 Location: 3385729-3385891 bp Feature: gene Location: 3386067-3386273 bp Ori: AXQ55721.1 Feature: domain Description: DUF397 Location: 3386085-3386250 bp Feature: domain Description: DUF397 Location: 3386085-3386250 bp Feature: gene Location: 3386434-3388167 bp Ori: AXQ58967.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3386467-3386707 bp Feature: domain Description: RVT_N Location: 3386467-3386707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386764-3387424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386764-3387424 bp Feature: domain Description: GIIM Note: maturase Location: 3387478-3387709 bp Feature: domain Description: GIIM Note: maturase Location: 3387478-3387709 bp Feature: domain Description: HNH Note: nucleases Location: 3388033-3388135 bp Feature: domain Description: HNH Note: nucleases Location: 3388033-33881 35 bp Feature: gene Location: 3388757-3389644 bp Ori: AXQ55722.1 Feature: domain Description: HTH_31 Location: 3388805-3388979 bp Feature: domain Description: HTH_31 Location: 3388805-3388979 bp Feature: gene Location: 3389813-3389992 bp Feature: gene Location: 3600652-3601968 bp Feature: gene Location: 3601965-3602867 bp Feature: gene Location: 3602931-3604217 bp Ori: AXQ55917.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3603489-3603678 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3603489-3603678 bp Feature: gene Location: 3604247-3607183 bp Ori: AXQ55918.1 Feature: domain Description: HD_6 Location: 3604376-3605009 bp Feature: domain Description: HD_6 Location: 3604376-3605009 bp Feature: domain Description: cas3_core Location: 3605564-3606380 bp Feature: domain Description: cas3_core Location: 3605564-3606380 bp Feature: domain Description: Cas3_C Location: 3606839-3607145 bp Feature: domain Description: Cas3_C Location: 3606839-36071 45 bp Feature: gene Location: 3607286-3609037 bp Ori: AXQ55919.1 Gene: casA Feature: domain Description: CRISPR_Cse1 Location: 3607295-3608861 bp Feature: domain Description: CRISPR_Cse1 Location: 3607295-3608861 bp Feature: gene Location: 4184968-4185159 bp Feature: gene Location: 4185266-4186150 bp Ori: AXQ56369.1 Feature: domain Description: HTH_31 Location: 4185311-4185479 bp Feature: domain Description: HTH_31 Location: 41 8531 1 -41 85479 bp Feature: gene Location: 4186740-4188473 bp Ori: AXQ59019.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4186773-4187013 bp Feature: domain Description: RVT_N Location: 41 86773-41 8701 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4187070-4187730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 87070-41 87730 bp Feature: domain Description: GIIM Note: maturase Location: 4187784-4188015 bp Feature: domain Description: GIIM Note: maturase Location: 41 87784-41 8801 5 bp Feature: domain Description: HNH Note: nucleases Location: 4188339-4188441 bp Feature: domain Description: HNH Note: nucleases Location: 41 88339-41 88441 bp Feature: gene Location: 4188634-4188843 bp Ori: AXQ56370.1 Feature: domain Description: DUF397 Location: 4188655-4188820 bp Feature: domain Description: DUF397 Location: 41 88655-41 88820 bp Feature: gene Location: 4189004-4189204 bp Ori: AXQ56371.1 Feature: domain Description: DUF397 Location: 4189031-4189196 bp Feature: domain Description: DUF397 Location: 41 89031 -41 891 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), PnbA (COG2272), DUF664 (pfam04978), DUF397 (pfam04149), RVT_N (pfam13655), HNH (pfam01844), HTH_31 (pfam13560)
RVT-CRISPR/RVT-UG13/RVT-UG21/RVT-UG23(RVT-UNC), HD_6 (pfam18019), cas3_core (TIGR01587), Cas3_C (pfam18395), CRISPR_Cse1 (pfam09481)