myRT

myRT report for GCA_003433235.1_ASM343323v1

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Seq: CP029605.1 Pseudomonas aeruginosa strain 24Pae112 chromosome, complete genome (7097241 bp)
Overview 1 RT 1: 660635-671369 bp Neighborhood of RT #1 [660635, 671371] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 660635-660970 bp Ori: AXS69248.1 Feature: domain Description: NERD Location: 660734-660905 bp Feature: domain Description: NERD Location: 660734-660905 bp Feature: gene Location: 661063-662184 bp Ori: AXS69249.1 Gene: fic Feature: domain Description: COG3177 Location: 661081-662173 bp Feature: domain Description: COG31 77 Location: 661 081 -6621 73 bp Feature: gene Location: 662908-664593 bp Ori: AXS69250.1 Gene: ltrA Feature: domain Description: RVT_N Location: 662965-663205 bp Feature: domain Description: RVT_N Location: 662965-663205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663253-663889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663253-663889 bp Feature: domain Description: GIIM Note: maturase Location: 663943-664174 bp Feature: domain Description: GIIM Note: maturase Location: 663943-6641 74 bp Feature: domain Description: HNH Note: nucleases Location: 664426-664564 bp Feature: domain Description: HNH Note: nucleases Location: 664426-664564 bp Feature: gene Location: 665674-669411 bp Ori: AXS69251.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 665782-666439 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 665782-666439 bp Feature: domain Description: PRK09776 Location: 666652-667123 bp Feature: domain Description: PRK09776 Location: 666652-6671 23 bp Feature: domain Description: PAS Location: 667183-667705 bp Feature: domain Description: PAS Location: 6671 83-667705 bp Feature: domain Description: PRK10060 Location: 667714-669361 bp Feature: domain Description: PRK1 0060 Location: 66771 4-669361 bp Feature: gene Location: 669518-671371 bp Ori: AXS69252.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 669530-671369 bp Feature: domain Description: PRK05658 Location: 669530-671 369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)