myRT

myRT report for GCA_003433275.1_ASM343327v1

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Seq: CP009050.1 Escherichia coli NCCP15648, complete genome (5329605 bp)
Overview 1 RT 1: 3264987-3269342 bp 2 RT 2: 3633459-3639213 bp 3 RT 3: 3656348-3663228 bp 4 RT 4: 5012150-5019914 bp 5 RT 5: 5033871-5039952 bp 6 RT 6: 5231143-5236272 bp Neighborhood of RT #1 [3264987, 3269342] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [3633459, 3639224] HTH_38 Tra8 PHA02517 RVT-GII GIIM COG3547 PHA02517 Neighborhood of RT #3 [3656348, 3663281] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Neighborhood of RT #4 [5012150, 5019916] InsE PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Neighborhood of RT #5 [5033871, 5039954] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [5231143, 5236274] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 3264987-3265313 bp Ori: ASQ68157.1 Feature: domain Description: InsE Location: 3264990-3265311 bp Feature: domain Description: InsE Location: 3264990-326531 1 bp Feature: gene Location: 3265313-3265792 bp Ori: ASQ68158.1 Feature: domain Description: PHA02517 Location: 3265373-3265727 bp Feature: domain Description: PHA0251 7 Location: 3265373-3265727 bp Feature: gene Location: 3266384-3267907 bp Ori: ASQ68159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266657-3267389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266657-3267389 bp Feature: domain Description: GIIM Note: maturase Location: 3267464-3267662 bp Feature: domain Description: GIIM Note: maturase Location: 3267464-3267662 bp Feature: gene Location: 3268099-3268470 bp Ori: ASQ68160.1 Feature: domain Description: PHA02517 Location: 3268102-3268468 bp Feature: domain Description: PHA0251 7 Location: 32681 02-3268468 bp Feature: gene Location: 3268473-3269342 bp Feature: gene Location: 3633459-3634610 bp Ori: ASQ68506.1 Feature: domain Description: HTH_38 Location: 3633468-3633582 bp Feature: domain Description: HTH_38 Location: 3633468-3633582 bp Feature: domain Description: Tra8 Location: 3633618-3634599 bp Feature: domain Description: Tra8 Location: 363361 8-3634599 bp Feature: gene Location: 3634927-3635166 bp Ori: ASQ68507.1 Feature: domain Description: PHA02517 Location: 3634930-3635101 bp Feature: domain Description: PHA0251 7 Location: 3634930-36351 01 bp Feature: gene Location: 3635758-3637281 bp Ori: ASQ68508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3636031-3636763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3636031 -3636763 bp Feature: domain Description: GIIM Note: maturase Location: 3636838-3637036 bp Feature: domain Description: GIIM Note: maturase Location: 3636838-3637036 bp Feature: gene Location: 3637823-3638899 bp Ori: ASQ68509.1 Feature: domain Description: COG3547 Location: 3637862-3638783 bp Feature: domain Description: COG3547 Location: 3637862-3638783 bp Feature: gene Location: 3639018-3639224 bp Ori: ASQ68510.1 Feature: domain Description: PHA02517 Location: 3639021-3639213 bp Feature: domain Description: PHA0251 7 Location: 3639021 -363921 3 bp Feature: gene Location: 3656348-3656497 bp Feature: gene Location: 3657054-3657440 bp Ori: ASQ68527.1 Feature: domain Description: PHA02517 Location: 3657057-3657438 bp Feature: domain Description: PHA0251 7 Location: 3657057-3657438 bp Feature: gene Location: 3657617-3659140 bp Ori: ASQ68528.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657890-3658622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657890-3658622 bp Feature: domain Description: GIIM Note: maturase Location: 3658697-3658895 bp Feature: domain Description: GIIM Note: maturase Location: 3658697-3658895 bp Feature: gene Location: 3659732-3660295 bp Ori: ASQ68529.1 Feature: domain Description: PHA02517 Location: 3659876-3660230 bp Feature: domain Description: PHA0251 7 Location: 3659876-3660230 bp Feature: gene Location: 3660732-3663281 bp Ori: ASQ68530.1 Feature: domain Description: VI_ClpV1 Location: 3660768-3663228 bp Feature: domain Description: VI_ClpV1 Location: 3660768-3663228 bp Feature: gene Location: 5012150-5012476 bp Ori: ASQ69769.1 Feature: domain Description: InsE Location: 5012153-5012474 bp Feature: domain Description: InsE Location: 501 21 53-501 2474 bp Feature: gene Location: 5012476-5012955 bp Ori: ASQ69770.1 Feature: domain Description: PHA02517 Location: 5012536-5012890 bp Feature: domain Description: PHA0251 7 Location: 501 2536-501 2890 bp Feature: gene Location: 5013547-5015070 bp Ori: ASQ69771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5013820-5014552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 3820-501 4552 bp Feature: domain Description: GIIM Note: maturase Location: 5014627-5014825 bp Feature: domain Description: GIIM Note: maturase Location: 501 4627-501 4825 bp Feature: gene Location: 5015247-5015633 bp Ori: ASQ69772.1 Feature: domain Description: PHA02517 Location: 5015250-5015631 bp Feature: domain Description: PHA0251 7 Location: 501 5250-501 5631 bp Feature: gene Location: 5015798-5019916 bp Ori: ASQ69773.1 Feature: domain Description: Peptidase_S6 Location: 5015951-5018123 bp Feature: domain Description: Peptidase_S6 Location: 501 5951 -501 81 23 bp Feature: domain Description: autotrans_barl Location: 5018687-5019914 bp Feature: domain Description: autotrans_barl Location: 501 8687-501 991 4 bp Feature: gene Location: 5033871-5036069 bp Ori: ASQ69787.1 Feature: domain Description: TonB-siderophor Location: 5034006-5036067 bp Feature: domain Description: TonB-siderophor Location: 5034006-5036067 bp Feature: gene Location: 5036471-5036842 bp Ori: ASQ69788.1 Feature: domain Description: PHA02517 Location: 5036474-5036840 bp Feature: domain Description: PHA0251 7 Location: 5036474-5036840 bp Feature: gene Location: 5037034-5038557 bp Ori: ASQ69789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5037307-5038039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5037307-5038039 bp Feature: domain Description: GIIM Note: maturase Location: 5038114-5038312 bp Feature: domain Description: GIIM Note: maturase Location: 50381 1 4-503831 2 bp Feature: gene Location: 5039149-5039628 bp Ori: ASQ69790.1 Feature: domain Description: PHA02517 Location: 5039209-5039563 bp Feature: domain Description: PHA0251 7 Location: 5039209-5039563 bp Feature: gene Location: 5039628-5039954 bp Ori: ASQ69791.1 Feature: domain Description: InsE Location: 5039631-5039952 bp Feature: domain Description: InsE Location: 5039631 -5039952 bp Feature: gene Location: 5231143-5231445 bp Ori: ASQ69974.1 Feature: domain Description: InsE Location: 5231182-5231431 bp Feature: domain Description: InsE Location: 5231 1 82-5231 431 bp Feature: gene Location: 5231687-5231926 bp Ori: ASQ69975.1 Feature: domain Description: PHA02517 Location: 5231690-5231861 bp Feature: domain Description: PHA0251 7 Location: 5231 690-5231 861 bp Feature: gene Location: 5232518-5234041 bp Ori: ASQ69976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5232791-5233523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5232791 -5233523 bp Feature: domain Description: GIIM Note: maturase Location: 5233598-5233796 bp Feature: domain Description: GIIM Note: maturase Location: 5233598-5233796 bp Feature: gene Location: 5234692-5234949 bp Feature: gene Location: 5235507-5236274 bp Ori: ASQ69978.1 Feature: domain Description: fecE Location: 5235510-5236272 bp Feature: domain Description: fecE Location: 523551 0-5236272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), COG3547 (Transposase ), VI_ClpV1 (TIGR03345), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)
TonB-siderophor (TIGR01783), fecE (PRK11231)

Seq: CP009053.1 Escherichia coli NCCP15648 plasmid p15648-3, complete sequence (78111 bp)
Overview 1 RT 1: 21632-27282 bp 2 RT 2: 36137-39996 bp 3 RT 3: 64703-69022 bp Neighborhood of RT #1 [21632, 27308] PRK13720 PRK13704 RVT-GII GIIM HNHc DDE_Tnp_IS66 LZ_Tnp_IS66 Neighborhood of RT #2 [36137, 40028] Rve RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #3 [64703, 69024] InsE PHA02517 RVT-GII GIIM PHA02517 umuC Feature: gene Location: 21632-21844 bp Ori: ASQ70293.1 Feature: domain Description: PRK13720 Location: 21635-21842 bp Feature: domain Description: PRK1372 0 Location: 2 1635-2 1842 bp Feature: gene Location: 22066-22599 bp Ori: ASQ70294.1 Feature: domain Description: PRK13704 Location: 22069-22594 bp Feature: domain Description: PRK13704 Location: 2 2 069-2 2 594 bp Feature: gene Location: 24161-25435 bp Ori: ASQ70295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24164-24746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4164-2 4746 bp Feature: domain Description: GIIM Note: maturase Location: 24797-25031 bp Feature: domain Description: GIIM Note: maturase Location: 2 4797-2 5031 bp Feature: domain Description: HNHc Note: nucleases Location: 25241-25400 bp Feature: domain Description: HNHc Note: nucleases Location: 2 52 41-2 5400 bp Feature: gene Location: 25890-26723 bp Ori: ASQ70296.1 Feature: domain Description: DDE_Tnp_IS66 Location: 25896-26661 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 5896-2 6661 bp Feature: gene Location: 27048-27308 bp Ori: ASQ70297.1 Feature: domain Description: LZ_Tnp_IS66 Location: 27174-27282 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 7174-2 72 82 bp Feature: gene Location: 36137-36841 bp Ori: ASQ70306.1 Feature: domain Description: Rve Location: 36140-36785 bp Feature: domain Description: Rve Location: 36140-36785 bp Feature: gene Location: 36981-37382 bp Feature: gene Location: 37591-38631 bp Ori: ASQ70308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37600-38218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37600-382 18 bp Feature: domain Description: GIIM Note: maturase Location: 38266-38497 bp Feature: domain Description: GIIM Note: maturase Location: 382 66-38497 bp Feature: gene Location: 38721-39647 bp Ori: ASQ70309.1 Feature: domain Description: COG3436 Location: 39057-39537 bp Feature: domain Description: COG3436 Location: 39057-39537 bp Feature: gene Location: 39678-40028 bp Ori: ASQ70310.1 Feature: domain Description: TnpB_IS66 Location: 39705-39996 bp Feature: domain Description: TnpB_IS66 Location: 39705-39996 bp Feature: gene Location: 64703-65029 bp Ori: ASQ70340.1 Feature: domain Description: InsE Location: 64706-65027 bp Feature: domain Description: InsE Location: 64706-6502 7 bp Feature: gene Location: 65029-65508 bp Ori: ASQ70341.1 Feature: domain Description: PHA02517 Location: 65089-65443 bp Feature: domain Description: PHA02 517 Location: 65089-65443 bp Feature: gene Location: 66100-67623 bp Ori: ASQ70342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66373-67105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66373-67105 bp Feature: domain Description: GIIM Note: maturase Location: 67180-67378 bp Feature: domain Description: GIIM Note: maturase Location: 67180-67378 bp Feature: gene Location: 67815-68186 bp Ori: ASQ70343.1 Feature: domain Description: PHA02517 Location: 67818-68184 bp Feature: domain Description: PHA02 517 Location: 67818-68184 bp Feature: gene Location: 68170-69024 bp Ori: ASQ70344.1 Feature: domain Description: umuC Location: 68224-69022 bp Feature: domain Description: umuC Location: 682 2 4-6902 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13720 (modulator of post-segregation killing protein; Provisional), PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007), Rve (COG3316), COG3436 (Transposase ), TnpB_IS66 (pfam05717)
InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), umuC (PRK03609)