myRT

myRT report for GCA_003443775.1_ASM344377v1

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Seq: CP028944.1 Vibrio sp. dhg chromosome 2, complete sequence (1995515 bp)
Overview 1 RT 1: 11833-18020 bp Neighborhood of RT #1 [11833, 18031] Abi_C RVT_N RVT-GII GIIM PAS_9 PAS Tar Feature: gene Location: 11833-13029 bp Feature: gene Location: 13157-14041 bp Ori: AXT72442.1 Feature: domain Description: Abi_C Location: 13745-13967 bp Feature: domain Description: Abi_C Location: 1 3745-1 3967 bp Feature: gene Location: 14776-16248 bp Ori: AXT72443.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14824-15067 bp Feature: domain Description: RVT_N Location: 1 4824-1 5067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15112-15739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 1 2-1 5739 bp Feature: domain Description: GIIM Note: maturase Location: 15799-16024 bp Feature: domain Description: GIIM Note: maturase Location: 1 5799-1 6024 bp Feature: gene Location: 16164-16360 bp Feature: gene Location: 16718-18031 bp Ori: AXT72444.1 Feature: domain Description: PAS_9 Location: 16820-17117 bp Feature: domain Description: PAS_9 Location: 1 6820-1 71 1 7 bp Feature: domain Description: PAS Location: 17183-17309 bp Feature: domain Description: PAS Location: 1 71 83-1 7309 bp Feature: domain Description: Tar Location: 17459-18020 bp Feature: domain Description: Tar Location: 1 7459-1 8020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abi_C (pfam14355), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PAS_9 (pfam13426), PAS (smart00091), Tar (COG0840)

Seq: CP028943.1 Vibrio sp. dhg chromosome 1, complete sequence (3349595 bp)
Overview 1 RT 1: 2506035-2510286 bp Neighborhood of RT #1 [2506035, 2510432] InsE RVT-GII GIIM PHA02517 cellulose_bcsE Feature: gene Location: 2506035-2506287 bp Ori: AXT71638.1 Feature: domain Description: InsE Location: 2506041-2506287 bp Feature: domain Description: InsE Location: 2 506041-2 5062 87 bp Feature: gene Location: 2505164-2506035 bp Feature: gene Location: 2506469-2507992 bp Ori: AXT71639.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506742-2507474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 506742 -2 507474 bp Feature: domain Description: GIIM Note: maturase Location: 2507567-2507774 bp Feature: domain Description: GIIM Note: maturase Location: 2 507567-2 507774 bp Feature: gene Location: 2508061-2508534 bp Feature: domain Description: PHA02517 Location: 2508079-2508505 bp Feature: domain Description: PHA02 517 Location: 2 508079-2 508505 bp Feature: gene Location: 2508849-2510432 bp Ori: AXT71640.1 Gene: bcsE Feature: domain Description: cellulose_bcsE Location: 2509329-2510286 bp Feature: domain Description: cellulose_bcsE Location: 2 50932 9-2 5102 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), cellulose_bcsE (TIGR03369)