myRT

myRT report for GCA_003481905.1_ASM348190v1

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Seq: CP019858.1 Clostridioides difficile strain DSM 29688 chromosome, complete genome (4228964 bp)
Overview 1 RT 1: 472329-480481 bp 2 RT 2: 496259-501867 bp Neighborhood of RT #1 [472329, 480615] Cys_rich_VLP FCS DUF4366 RVT-GII HNHc VirB4_CagE Neighborhood of RT #2 [496259, 501950] ArdA RimI RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 472329-472811 bp Ori: AXU77900.1 Feature: domain Description: Cys_rich_VLP Location: 472476-472638 bp Feature: domain Description: Cys_rich_VLP Location: 472476-472638 bp Feature: domain Description: FCS Location: 472674-472764 bp Feature: domain Description: FCS Location: 472674-472764 bp Feature: gene Location: 472860-473600 bp Ori: AXU77901.1 Feature: domain Description: DUF4366 Location: 473040-473502 bp Feature: domain Description: DUF4366 Location: 473040-473502 bp Feature: gene Location: 474272-476230 bp Ori: AXU77902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474608-475352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474608-475352 bp Feature: domain Description: HNHc Note: nucleases Location: 475931-476072 bp Feature: domain Description: HNHc Note: nucleases Location: 475931 -476072 bp Feature: gene Location: 476883-478280 bp Feature: gene Location: 478261-480615 bp Ori: AXU77904.1 Feature: domain Description: VirB4_CagE Location: 479002-480481 bp Feature: domain Description: VirB4_CagE Location: 479002-480481 bp Feature: gene Location: 496259-496762 bp Ori: AXU77918.1 Feature: domain Description: ArdA Location: 496316-496748 bp Feature: domain Description: ArdA Location: 49631 6-496748 bp Feature: gene Location: 497078-497551 bp Ori: AXU77919.1 Feature: domain Description: RimI Location: 497195-497534 bp Feature: domain Description: RimI Location: 4971 95-497534 bp Feature: gene Location: 497956-499866 bp Ori: AXU77920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498289-499027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498289-499027 bp Feature: domain Description: HNHc Note: nucleases Location: 499582-499747 bp Feature: domain Description: HNHc Note: nucleases Location: 499582-499747 bp Feature: gene Location: 500608-500742 bp Ori: AXU77921.1 Feature: domain Description: DUF3789 Location: 500620-500713 bp Feature: domain Description: DUF3789 Location: 500620-50071 3 bp Feature: gene Location: 500754-501950 bp Ori: AXU77922.1 Feature: domain Description: HTH_XRE Location: 500778-500931 bp Feature: domain Description: HTH_XRE Location: 500778-500931 bp Feature: domain Description: Rol_Rep_N Location: 500964-501228 bp Feature: domain Description: Rol_Rep_N Location: 500964-501 228 bp Feature: domain Description: Rep_trans Location: 501252-501867 bp Feature: domain Description: Rep_trans Location: 501 252-501 867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cys_rich_VLP (pfam14194), FCS (LOAD_FCS), DUF4366 (pfam14283), RVT-GII, HNHc (smart00507), VirB4_CagE (TIGR00929), ArdA (pfam07275), RimI (COG0456), DUF3789 (pfam12664), HTH_XRE (smart00530)
Rol_Rep_N (pfam18106), Rep_trans (pfam02486)