myRT

myRT report for GCA_003482065.1_ASM348206v1

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Seq: CP012321.1 Clostridioides difficile strain DSM 28666 chromosome, complete genome (4122585 bp)
Overview 1 RT 1: 282147-290011 bp 2 RT 2: 456179-463027 bp 3 RT 3: 1901818-1909125 bp 4 RT 4: 2392955-2399612 bp Neighborhood of RT #1 [282147, 290088] TrbL AAA_10 RVT-GII AAA_10 TcpE Neighborhood of RT #2 [456179, 463104] PrgI RVT-GII HNHc VirD4 DUF3801 Neighborhood of RT #3 [1901818, 1909125] 7tmA_5-HT1A_invertebrates 7tmA_5-HT1A_invertebrates AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2392955, 2399626] FlgJ PRK13807 RVT-GII HNHc PRK13807 Feature: gene Location: 282147-284528 bp Ori: AXU59433.1 Feature: domain Description: TrbL Location: 283098-283455 bp Feature: domain Description: TrbL Location: 283098-283455 bp Feature: gene Location: 284528-285364 bp Ori: AXU59434.1 Feature: domain Description: AAA_10 Location: 284531-285329 bp Feature: domain Description: AAA_1 0 Location: 284531 -285329 bp Feature: gene Location: 285582-287408 bp Ori: AXU59435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285882-286581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285882-286581 bp Feature: gene Location: 288105-289658 bp Ori: AXU59436.1 Feature: domain Description: AAA_10 Location: 289437-289620 bp Feature: domain Description: AAA_1 0 Location: 289437-289620 bp Feature: gene Location: 289642-290088 bp Ori: AXU59437.1 Feature: domain Description: TcpE Location: 289714-290011 bp Feature: domain Description: TcpE Location: 28971 4-29001 1 bp Feature: gene Location: 456179-456583 bp Ori: AXU59596.1 Feature: domain Description: PrgI Location: 456194-456467 bp Feature: domain Description: PrgI Location: 4561 94-456467 bp Feature: gene Location: 456605-457474 bp Feature: gene Location: 457740-459620 bp Ori: AXU59598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458067-458805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458067-458805 bp Feature: domain Description: HNHc Note: nucleases Location: 459354-459504 bp Feature: domain Description: HNHc Note: nucleases Location: 459354-459504 bp Feature: gene Location: 460835-462625 bp Ori: AXU59599.1 Feature: domain Description: VirD4 Location: 461042-462485 bp Feature: domain Description: VirD4 Location: 461 042-462485 bp Feature: gene Location: 462622-463104 bp Ori: AXU59600.1 Feature: domain Description: DUF3801 Location: 462697-463027 bp Feature: domain Description: DUF3801 Location: 462697-463027 bp Feature: gene Location: 1901818-1903995 bp Ori: AXU60862.1 Feature: domain Description: 7tmA_5-HT1A_invertebrates Location: 1902121-1902379 bp Feature: domain Description: 7tmA_5-HT1 A_invertebrates Location: 1 9021 21 -1 902379 bp Feature: domain Description: 7tmA_5-HT1A_invertebrates Location: 1903330-1903777 bp Feature: domain Description: 7tmA_5-HT1 A_invertebrates Location: 1 903330-1 903777 bp Feature: gene Location: 1903998-1904915 bp Ori: AXU60863.1 Feature: domain Description: AAA_10 Location: 1904001-1904883 bp Feature: domain Description: AAA_1 0 Location: 1 904001 -1 904883 bp Feature: gene Location: 1905049-1906875 bp Ori: AXU60864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1905349-1906048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 905349-1 906048 bp Feature: gene Location: 1907572-1908678 bp Ori: AXU60865.1 Feature: domain Description: AAA_10 Location: 1908457-1908643 bp Feature: domain Description: AAA_1 0 Location: 1 908457-1 908643 bp Feature: gene Location: 1908727-1909125 bp Feature: gene Location: 2392955-2393848 bp Ori: AXU61310.1 Feature: domain Description: FlgJ Location: 2393294-2393825 bp Feature: domain Description: FlgJ Location: 2393294-2393825 bp Feature: gene Location: 2394073-2394897 bp Ori: AXU61311.1 Gene: mapA_1 Feature: domain Description: PRK13807 Location: 2394085-2394886 bp Feature: domain Description: PRK1 3807 Location: 2394085-2394886 bp Feature: gene Location: 2394978-2396825 bp Ori: AXU61312.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395314-2396013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239531 4-239601 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2396541-2396700 bp Feature: domain Description: HNHc Note: nucleases Location: 2396541 -2396700 bp Feature: gene Location: 2397235-2397396 bp Feature: gene Location: 2398142-2399626 bp Ori: AXU61314.1 Gene: mapA_2 Feature: domain Description: PRK13807 Location: 2398160-2399612 bp Feature: domain Description: PRK1 3807 Location: 23981 60-239961 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), PrgI (pfam12666), HNHc (smart00507), VirD4 (COG3505), DUF3801 (pfam12687), 7tmA_5-HT1A_invertebrates (cd15331), FlgJ (COG1705)
PRK13807 (maltose phosphorylase; Provisional)