myRT

myRT report for GCA_003516105.2_ASM351610v2

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Seq: CP027109.1 Cronobacter sakazakii strain CS-09 chromosome, complete genome (4496886 bp)
Overview 1 RT 1: 2882905-2890148 bp 2 RT 2: 3531935-3536334 bp Neighborhood of RT #1 [2882905, 2890165] AAA_21 AAA_15 DUF4435 Peptidase_C92 Peptidase_C92 RVT-UG15 VbhA_like VapI TrbL_P TrbL Neighborhood of RT #2 [3531935, 3536334] TraD PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 2882905-2884374 bp Ori: AXX03047.1 Feature: domain Description: AAA_21 Location: 2882962-2883019 bp Feature: domain Description: AAA_21 Location: 2882962-288301 9 bp Feature: domain Description: AAA_15 Location: 2883247-2883616 bp Feature: domain Description: AAA_1 5 Location: 2883247-288361 6 bp Feature: domain Description: DUF4435 Location: 2883772-2884063 bp Feature: domain Description: DUF4435 Location: 2883772-2884063 bp Feature: gene Location: 2884963-2885730 bp Ori: AXX03048.1 Feature: domain Description: Peptidase_C92 Location: 2885134-2885350 bp Feature: domain Description: Peptidase_C92 Location: 28851 34-2885350 bp Feature: domain Description: Peptidase_C92 Location: 2885485-2885545 bp Feature: domain Description: Peptidase_C92 Location: 2885485-2885545 bp Feature: gene Location: 2885839-2887146 bp Ori: AXX04625.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2885944-2886358 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 2885944-2886358 bp Feature: gene Location: 2888258-2888692 bp Ori: AXX03049.1 Gene: higA Feature: domain Description: VbhA_like Location: 2888273-2888435 bp Feature: domain Description: VbhA_like Location: 2888273-2888435 bp Feature: domain Description: VapI Location: 2888450-2888687 bp Feature: domain Description: VapI Location: 2888450-2888687 bp Feature: gene Location: 2888774-2890165 bp Ori: AXX03050.1 Gene: trbL Feature: domain Description: TrbL_P Location: 2888852-2889749 bp Feature: domain Description: TrbL_P Location: 2888852-2889749 bp Feature: domain Description: TrbL Location: 2889884-2890148 bp Feature: domain Description: TrbL Location: 2889884-28901 48 bp Feature: gene Location: 3531935-3532243 bp Ori: AXX03626.1 Feature: domain Description: TraD Location: 3532049-3532223 bp Feature: domain Description: TraD Location: 3532049-3532223 bp Feature: gene Location: 3533075-3534577 bp Ori: AXX03627.1 Feature: domain Description: PRK13889 Location: 3533078-3533657 bp Feature: domain Description: PRK1 3889 Location: 3533078-3533657 bp Feature: gene Location: 3534654-3535754 bp Ori: AXX03628.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3534795-3535350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3534795-3535350 bp Feature: gene Location: 3535747-3536028 bp Ori: AXX03629.1 Feature: domain Description: HTH_XRE Location: 3535762-3535927 bp Feature: domain Description: HTH_XRE Location: 3535762-3535927 bp Feature: gene Location: 3536119-3536334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), AAA_15 (pfam13175), DUF4435 (pfam14491), Peptidase_C92 (pfam05708), RVT-UG15, VbhA_like (cl17006), VapI (COG3093), TrbL_P (TIGR02783), TrbL (pfam04610), TraD (pfam06412)
PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)