myRT

myRT report for GCA_003534205.1_Lweihen2.0

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Seq: CP011102.1 Listeria weihenstephanensis strain WS 4560, complete genome (3406292 bp)
Overview 1 RT 1: 952865-962865 bp 2 RT 2: 2389941-2396202 bp Neighborhood of RT #1 [952865, 962900] Crp Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 BID_2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 Endotoxin_C2 RVT-GII GIIM Crp Crp HTH_Crp_2 Neighborhood of RT #2 [2389941, 2397047] DUF3958 DUF3130 RVT-Retrons DUF3173 BRR2 BRR2 Feature: gene Location: 952865-953503 bp Ori: AQY50372.1 Feature: domain Description: Crp Location: 953015-953462 bp Feature: domain Description: Crp Location: 95301 5-953462 bp Feature: gene Location: 953920-959289 bp Ori: AQY50373.1 Feature: domain Description: Endotoxin_C2 Location: 954568-954739 bp Feature: domain Description: Endotoxin_C2 Location: 954568-954739 bp Feature: domain Description: Endotoxin_C2 Location: 954772-954961 bp Feature: domain Description: Endotoxin_C2 Location: 954772-954961 bp Feature: domain Description: Endotoxin_C2 Location: 954991-955180 bp Feature: domain Description: Endotoxin_C2 Location: 954991 -9551 80 bp Feature: domain Description: Endotoxin_C2 Location: 955210-955396 bp Feature: domain Description: Endotoxin_C2 Location: 95521 0-955396 bp Feature: domain Description: Endotoxin_C2 Location: 955429-955618 bp Feature: domain Description: Endotoxin_C2 Location: 955429-95561 8 bp Feature: domain Description: Endotoxin_C2 Location: 955636-955825 bp Feature: domain Description: Endotoxin_C2 Location: 955636-955825 bp Feature: domain Description: Endotoxin_C2 Location: 955864-956050 bp Feature: domain Description: Endotoxin_C2 Location: 955864-956050 bp Feature: domain Description: Endotoxin_C2 Location: 956086-956272 bp Feature: domain Description: Endotoxin_C2 Location: 956086-956272 bp Feature: domain Description: Endotoxin_C2 Location: 956302-956488 bp Feature: domain Description: Endotoxin_C2 Location: 956302-956488 bp Feature: domain Description: Endotoxin_C2 Location: 956524-956707 bp Feature: domain Description: Endotoxin_C2 Location: 956524-956707 bp Feature: domain Description: Endotoxin_C2 Location: 956713-956896 bp Feature: domain Description: Endotoxin_C2 Location: 95671 3-956896 bp Feature: domain Description: BID_2 Location: 956926-957127 bp Feature: domain Description: BID_2 Location: 956926-9571 27 bp Feature: domain Description: Endotoxin_C2 Location: 957160-957328 bp Feature: domain Description: Endotoxin_C2 Location: 9571 60-957328 bp Feature: domain Description: Endotoxin_C2 Location: 957361-957535 bp Feature: domain Description: Endotoxin_C2 Location: 957361 -957535 bp Feature: domain Description: Endotoxin_C2 Location: 957550-957721 bp Feature: domain Description: Endotoxin_C2 Location: 957550-957721 bp Feature: domain Description: Endotoxin_C2 Location: 957736-957910 bp Feature: domain Description: Endotoxin_C2 Location: 957736-95791 0 bp Feature: domain Description: Endotoxin_C2 Location: 957958-958126 bp Feature: domain Description: Endotoxin_C2 Location: 957958-9581 26 bp Feature: domain Description: Endotoxin_C2 Location: 958138-958312 bp Feature: domain Description: Endotoxin_C2 Location: 9581 38-95831 2 bp Feature: domain Description: Endotoxin_C2 Location: 958351-958531 bp Feature: domain Description: Endotoxin_C2 Location: 958351 -958531 bp Feature: gene Location: 959786-961174 bp Ori: AQY50374.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960107-960722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9601 07-960722 bp Feature: domain Description: GIIM Note: maturase Location: 960779-960995 bp Feature: domain Description: GIIM Note: maturase Location: 960779-960995 bp Feature: gene Location: 961246-961884 bp Ori: AQY50375.1 Feature: domain Description: Crp Location: 961327-961828 bp Feature: domain Description: Crp Location: 961 327-961 828 bp Feature: gene Location: 962229-962900 bp Ori: AQY50376.1 Feature: domain Description: Crp Location: 962340-962556 bp Feature: domain Description: Crp Location: 962340-962556 bp Feature: domain Description: HTH_Crp_2 Location: 962748-962865 bp Feature: domain Description: HTH_Crp_2 Location: 962748-962865 bp Feature: gene Location: 2389941-2390381 bp Ori: AQY51612.1 Feature: domain Description: DUF3958 Location: 2389950-2390187 bp Feature: domain Description: DUF3958 Location: 2389950-23901 87 bp Feature: gene Location: 2390401-2390694 bp Ori: AQY51613.1 Feature: domain Description: DUF3130 Location: 2390410-2390650 bp Feature: domain Description: DUF31 30 Location: 239041 0-2390650 bp Feature: gene Location: 2390952-2392727 bp Ori: AQY51614.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2391090-2391690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2391 090-2391 690 bp Feature: gene Location: 2394060-2394266 bp Ori: AQY52551.1 Feature: domain Description: DUF3173 Location: 2394075-2394234 bp Feature: domain Description: DUF31 73 Location: 2394075-2394234 bp Feature: gene Location: 2394960-2397047 bp Ori: AQY51615.1 Feature: domain Description: BRR2 Location: 2395194-2395533 bp Feature: domain Description: BRR2 Location: 23951 94-2395533 bp Feature: domain Description: BRR2 Location: 2395890-2396202 bp Feature: domain Description: BRR2 Location: 2395890-2396202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Crp (pfam00325), Endotoxin_C2 (pfam18449), BID_2 (smart00635), RVT-GII, GIIM (pfam08388), HTH_Crp_2 (pfam13545), DUF3958 (pfam13125), DUF3130 (pfam11328), RVT-Retrons, DUF3173 (pfam11372)
BRR2 (COG1204)