myRT

myRT report for GCA_003546865.1_ASM354686v1

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Seq: CP023434.1 Aerococcaceae bacterium ZY16052 chromosome, complete genome (2572159 bp)
Overview 1 RT 1: 476261-481731 bp 2 RT 2: 1031927-1048017 bp 3 RT 3: 1108143-1114308 bp 4 RT 4: 1425685-1431260 bp Neighborhood of RT #1 [476261, 481751] COG4584 CsgD RVT-GII PRK06171 BglG PTS_IIA_fru Neighborhood of RT #2 [1031927, 1048433] AcoB PRK11856 RVT-GII group_II_RT_mat YSIRK_signal Mub_B2 Flg_new Flg_new repeat_SSSPR51 MucBP_2 Mub_B2 Mub_B2 MucBP_2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Mub_B2 Neighborhood of RT #3 [1108143, 1115932] MgsA chaperone_ClpB RVT-GII RVT-GII RVT-GII GIIM P-type_ATPase_Ca_prok Neighborhood of RT #4 [1425685, 1431319] FMN_bind PRK07121 GIIM RVT-GII RVT-GII RVT-GII PTS-II-ABC-beta RpiR Feature: gene Location: 476261-476689 bp Ori: AXY24957.1 Feature: domain Description: COG4584 Location: 476321-476654 bp Feature: domain Description: COG4584 Location: 476321 -476654 bp Feature: gene Location: 476889-477071 bp Ori: AXY24958.1 Feature: domain Description: CsgD Location: 476919-477015 bp Feature: domain Description: CsgD Location: 47691 9-47701 5 bp Feature: gene Location: 477382-477720 bp Ori: AXY24959.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477508-477697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477508-477697 bp Feature: gene Location: 479077-479877 bp Ori: AXY24960.1 Feature: domain Description: PRK06171 Location: 479083-479875 bp Feature: domain Description: PRK061 71 Location: 479083-479875 bp Feature: gene Location: 479895-481751 bp Ori: AXY24961.1 Feature: domain Description: BglG Location: 479928-481224 bp Feature: domain Description: BglG Location: 479928-481 224 bp Feature: domain Description: PTS_IIA_fru Location: 481338-481731 bp Feature: domain Description: PTS_IIA_fru Location: 481 338-481 731 bp Feature: gene Location: 1031927-1032958 bp Ori: AXY25397.1 Feature: domain Description: AcoB Location: 1031942-1032941 bp Feature: domain Description: AcoB Location: 1 031 942-1 032941 bp Feature: gene Location: 1032983-1034212 bp Ori: AXY25398.1 Feature: domain Description: PRK11856 Location: 1032986-1034207 bp Feature: domain Description: PRK1 1 856 Location: 1 032986-1 034207 bp Feature: gene Location: 1034990-1035220 bp Ori: AXY25399.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035107-1035188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0351 07-1 0351 88 bp Feature: gene Location: 1035262-1035612 bp Ori: AXY25400.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1035265-1035598 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 035265-1 035598 bp Feature: gene Location: 1036800-1048433 bp Ori: AXY25401.1 Feature: domain Description: YSIRK_signal Location: 1036845-1036944 bp Feature: domain Description: YSIRK_signal Location: 1 036845-1 036944 bp Feature: domain Description: Mub_B2 Location: 1037493-1037535 bp Feature: domain Description: Mub_B2 Location: 1 037493-1 037535 bp Feature: domain Description: Flg_new Location: 1038111-1038261 bp Feature: domain Description: Flg_new Location: 1 0381 1 1 -1 038261 bp Feature: domain Description: Flg_new Location: 1039950-1040106 bp Feature: domain Description: Flg_new Location: 1 039950-1 0401 06 bp Feature: domain Description: repeat_SSSPR51 Location: 1040460-1040574 bp Feature: domain Description: repeat_SSSPR51 Location: 1 040460-1 040574 bp Feature: domain Description: MucBP_2 Location: 1041111-1041432 bp Feature: domain Description: MucBP_2 Location: 1 041 1 1 1 -1 041 432 bp Feature: domain Description: Mub_B2 Location: 1041633-1041774 bp Feature: domain Description: Mub_B2 Location: 1 041 633-1 041 774 bp Feature: domain Description: Mub_B2 Location: 1042140-1042398 bp Feature: domain Description: Mub_B2 Location: 1 0421 40-1 042398 bp Feature: domain Description: MucBP_2 Location: 1042479-1042725 bp Feature: domain Description: MucBP_2 Location: 1 042479-1 042725 bp Feature: domain Description: Mub_B2 Location: 1042845-1043055 bp Feature: domain Description: Mub_B2 Location: 1 042845-1 043055 bp Feature: domain Description: Mub_B2 Location: 1043277-1043484 bp Feature: domain Description: Mub_B2 Location: 1 043277-1 043484 bp Feature: domain Description: Mub_B2 Location: 1043907-1044111 bp Feature: domain Description: Mub_B2 Location: 1 043907-1 0441 1 1 bp Feature: domain Description: Mub_B2 Location: 1044297-1044501 bp Feature: domain Description: Mub_B2 Location: 1 044297-1 044501 bp Feature: domain Description: Mub_B2 Location: 1044681-1044888 bp Feature: domain Description: Mub_B2 Location: 1 044681 -1 044888 bp Feature: domain Description: Mub_B2 Location: 1045311-1045506 bp Feature: domain Description: Mub_B2 Location: 1 04531 1 -1 045506 bp Feature: domain Description: Mub_B2 Location: 1045929-1046130 bp Feature: domain Description: Mub_B2 Location: 1 045929-1 0461 30 bp Feature: domain Description: Mub_B2 Location: 1046544-1046754 bp Feature: domain Description: Mub_B2 Location: 1 046544-1 046754 bp Feature: domain Description: Mub_B2 Location: 1047168-1047363 bp Feature: domain Description: Mub_B2 Location: 1 0471 68-1 047363 bp Feature: domain Description: Mub_B2 Location: 1047816-1048017 bp Feature: domain Description: Mub_B2 Location: 1 04781 6-1 04801 7 bp Feature: gene Location: 1108143-1108565 bp Ori: AXY25450.1 Gene: mgsA Feature: domain Description: MgsA Location: 1108146-1108536 bp Feature: domain Description: MgsA Location: 1 1 081 46-1 1 08536 bp Feature: gene Location: 1108689-1111322 bp Ori: AXY25451.1 Gene: clpB Feature: domain Description: chaperone_ClpB Location: 1108722-1111290 bp Feature: domain Description: chaperone_ClpB Location: 1 1 08722-1 1 1 1 290 bp Feature: gene Location: 1111993-1112229 bp Ori: AXY25452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112110-1112215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 21 1 0-1 1 1 221 5 bp Feature: gene Location: 1112204-1112365 bp Ori: AXY26717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112210-1112363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 221 0-1 1 1 2363 bp Feature: gene Location: 1112437-1112808 bp Ori: AXY25453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112440-1112722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 2440-1 1 1 2722 bp Feature: gene Location: 1112700-1113266 bp Ori: AXY25454.1 Feature: domain Description: GIIM Note: maturase Location: 1112781-1113015 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 2781 -1 1 1 301 5 bp Feature: gene Location: 1113267-1115932 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1113279-1114308 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1 1 1 3279-1 1 1 4308 bp Feature: gene Location: 1425685-1427505 bp Ori: AXY25712.1 Feature: domain Description: FMN_bind Location: 1425724-1425934 bp Feature: domain Description: FMN_bind Location: 1 425724-1 425934 bp Feature: domain Description: PRK07121 Location: 1426075-1427488 bp Feature: domain Description: PRK071 21 Location: 1 426075-1 427488 bp Feature: gene Location: 1428074-1428466 bp Ori: AXY25713.1 Feature: domain Description: GIIM Note: maturase Location: 1428080-1428245 bp Feature: domain Description: GIIM Note: maturase Location: 1 428080-1 428245 bp Feature: gene Location: 1428498-1428869 bp Ori: AXY25714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428501-1428783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 428501 -1 428783 bp Feature: gene Location: 1428941-1429102 bp Ori: AXY26734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428947-1429100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 428947-1 4291 00 bp Feature: gene Location: 1429077-1429313 bp Ori: AXY25715.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429194-1429299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4291 94-1 429299 bp Feature: gene Location: 1430017-1430535 bp Ori: AXY25716.1 Feature: domain Description: PTS-II-ABC-beta Location: 1430053-1430515 bp Feature: domain Description: PTS-II-ABC-beta Location: 1 430053-1 43051 5 bp Feature: gene Location: 1430528-1431319 bp Ori: AXY25717.1 Feature: domain Description: RpiR Location: 1430531-1431260 bp Feature: domain Description: RpiR Location: 1 430531 -1 431 260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), CsgD (COG2771), RVT-GII, PRK06171 (sorbitol-6-phosphate 2-dehydrogenase; Provisional), BglG (COG3711), PTS_IIA_fru (cl00163), AcoB (COG0022), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), group_II_RT_mat (TIGR04416), YSIRK_signal (TIGR01168)
Mub_B2 (pfam17966), Flg_new (pfam09479), repeat_SSSPR51 (TIGR04308), MucBP_2 (pfam17965), MgsA (COG1803), chaperone_ClpB (TIGR03346), GIIM (pfam08388), P-type_ATPase_Ca_prok (cd02089), FMN_bind (smart00900), PRK07121 (FAD-binding protein)
PTS-II-ABC-beta (TIGR01995), RpiR (COG1737)