myRT

myRT report for GCA_003568825.1_ASM356882v1

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Seq: CP031962.1 Pseudoalteromonas tunicata strain D2 chromosome 2, complete sequence (982384 bp)
Overview 1 RT 1: 75319-80464 bp 2 RT 2: 810226-814866 bp 3 RT 3: 926054-930335 bp Neighborhood of RT #1 [75319, 80464] DDE_Tnp_1_6 RVT-GII Neighborhood of RT #2 [810226, 814934] Rhomboid RVT-GII GATase1_PfpI_2 Acetyltransf_1 Neighborhood of RT #3 [926054, 930335] Y2_Tnp RVT-GII Feature: gene Location: 75319-76149 bp Ori: AXT32819.1 Feature: domain Description: DDE_Tnp_1_6 Location: 75745-76132 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 75745-761 32 bp Feature: gene Location: 76360-76968 bp Feature: gene Location: 77582-78871 bp Ori: AXT32821.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77837-78503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77837-78503 bp Feature: gene Location: 79042-79932 bp Feature: gene Location: 80261-80464 bp Feature: gene Location: 810226-810678 bp Feature: gene Location: 810797-811417 bp Ori: AXT33309.1 Feature: domain Description: Rhomboid Location: 810953-811370 bp Feature: domain Description: Rhomboid Location: 81 0953-81 1 370 bp Feature: gene Location: 812179-813482 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812434-813010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 2434-81 301 0 bp Feature: gene Location: 813614-814192 bp Ori: AXT33310.1 Feature: domain Description: GATase1_PfpI_2 Location: 813623-814175 bp Feature: domain Description: GATase1 _PfpI_2 Location: 81 3623-81 41 75 bp Feature: gene Location: 814458-814934 bp Ori: AXT33311.1 Feature: domain Description: Acetyltransf_1 Location: 814500-814866 bp Feature: domain Description: Acetyltransf_1 Location: 81 4500-81 4866 bp Feature: gene Location: 926054-926323 bp Feature: domain Description: Y2_Tnp Location: 926057-926141 bp Feature: domain Description: Y2_Tnp Location: 926057-9261 41 bp Feature: gene Location: 926687-927646 bp Feature: gene Location: 928231-929520 bp Ori: AXT33396.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928486-929152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928486-9291 52 bp Feature: gene Location: 929652-930038 bp Feature: gene Location: 930123-930335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-GII, Rhomboid (pfam01694), GATase1_PfpI_2 (cd03139), Acetyltransf_1 (pfam00583), Y2_Tnp (pfam04986)

Seq: CP031961.1 Pseudoalteromonas tunicata strain D2 chromosome 1, complete sequence (3985138 bp)
Overview 1 RT 1: 676032-680468 bp 2 RT 2: 1565176-1569523 bp 3 RT 3: 1762805-1768180 bp 4 RT 4: 1968985-1973217 bp 5 RT 5: 2780487-2786254 bp 6 RT 6: 3926924-3931959 bp Neighborhood of RT #1 [676032, 680468] TIR-like RVT-GII Neighborhood of RT #2 [1565176, 1569523] DUF262 RVT-GII Neighborhood of RT #3 [1762805, 1768200] Tryp_SPc RVT-GII Tryp_SPc Neighborhood of RT #4 [1968985, 1973739] HEAT_2 RVT-GII integrase_gron Neighborhood of RT #5 [2780487, 2786277] Methyltransf_23 SLR RVT-GII am_tr_V_VC1184 Neighborhood of RT #6 [3926924, 3931964] TIGR00276 PRK10565 RVT-GII Nnr2 PRK10646 Feature: gene Location: 676032-676949 bp Ori: AXT29900.1 Feature: domain Description: TIR-like Location: 676536-676887 bp Feature: domain Description: TIR-like Location: 676536-676887 bp Feature: gene Location: 677185-677703 bp Feature: gene Location: 678331-679634 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678586-679162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678586-679162 bp Feature: gene Location: 679767-679976 bp Feature: gene Location: 680097-680468 bp Feature: gene Location: 1565176-1566207 bp Ori: AXT30592.1 Feature: domain Description: DUF262 Location: 1565242-1565662 bp Feature: domain Description: DUF2 62 Location: 15652 42 -1565662 bp Feature: gene Location: 1566369-1566662 bp Feature: gene Location: 1566806-1568109 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567061-1567637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567061-1567637 bp Feature: gene Location: 1568711-1568977 bp Feature: gene Location: 1569083-1569523 bp Feature: gene Location: 1762805-1763754 bp Feature: gene Location: 1763797-1764591 bp Ori: AXT30757.1 Feature: domain Description: Tryp_SPc Location: 1763947-1764577 bp Feature: domain Description: Tryp_SPc Location: 1763947-1764577 bp Feature: gene Location: 1764761-1766050 bp Ori: AXT30758.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1765016-1765682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1765016-1765682 bp Feature: gene Location: 1766686-1767126 bp Feature: gene Location: 1767412-1768200 bp Ori: AXT30760.1 Feature: domain Description: Tryp_SPc Location: 1767544-1768180 bp Feature: domain Description: Tryp_SPc Location: 1767544-1768180 bp Feature: gene Location: 1968985-1969404 bp Feature: gene Location: 1969491-1969871 bp Ori: AXT30911.1 Feature: domain Description: HEAT_2 Location: 1969542-1969701 bp Feature: domain Description: HEAT_2 Location: 1969542 -1969701 bp Feature: gene Location: 1969988-1971277 bp Ori: AXT30912.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1970243-1970909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19702 43-1970909 bp Feature: gene Location: 1971891-1972523 bp Feature: gene Location: 1972770-1973739 bp Feature: domain Description: integrase_gron Location: 1972791-1973217 bp Feature: domain Description: integrase_gron Location: 1972 791-19732 17 bp Feature: gene Location: 2780487-2781125 bp Ori: AXT31564.1 Feature: domain Description: Methyltransf_23 Location: 2780679-2781075 bp Feature: domain Description: Methyltransf_2 3 Location: 2 780679-2 781075 bp Feature: gene Location: 2782043-2782339 bp Ori: AXT31565.1 Feature: domain Description: SLR Location: 2782124-2782325 bp Feature: domain Description: SLR Location: 2 782 12 4-2 782 32 5 bp Feature: gene Location: 2782503-2783792 bp Ori: AXT31566.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2782758-2783424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 782 758-2 78342 4 bp Feature: gene Location: 2784295-2784918 bp Feature: gene Location: 2785042-2786277 bp Ori: AXT31568.1 Feature: domain Description: am_tr_V_VC1184 Location: 2785048-2786254 bp Feature: domain Description: am_tr_V_VC1184 Location: 2 785048-2 7862 54 bp Feature: gene Location: 3926924-3928051 bp Ori: AXT32481.1 Gene: queG Feature: domain Description: TIGR00276 Location: 3926969-3927974 bp Feature: domain Description: TIGR002 76 Location: 392 6969-392 7974 bp Feature: gene Location: 3928064-3929299 bp Ori: AXT32482.1 Feature: domain Description: PRK10565 Location: 3928085-3929297 bp Feature: domain Description: PRK10565 Location: 392 8085-392 92 97 bp Feature: gene Location: 3929819-3931108 bp Ori: AXT32483.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930074-3930740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930074-3930740 bp Feature: gene Location: 3931199-3931498 bp Ori: AXT32484.1 Feature: domain Description: Nnr2 Location: 3931217-3931493 bp Feature: domain Description: Nnr2 Location: 39312 17-3931493 bp Feature: gene Location: 3931506-3931964 bp Ori: AXT32485.1 Gene: tsaE Feature: domain Description: PRK10646 Location: 3931530-3931959 bp Feature: domain Description: PRK10646 Location: 3931530-3931959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-GII, DUF262 (pfam03235), Tryp_SPc (smart00020), HEAT_2 (pfam13646), integrase_gron (TIGR02249), Methyltransf_23 (pfam13489), SLR (sd00010), am_tr_V_VC1184 (TIGR01976), TIGR00276 (epoxyqueuosine reductase)
PRK10565 (putative carbohydrate kinase; Provisional), Nnr2 (COG0063), PRK10646 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE)