myRT

myRT report for GCA_003571565.1_ASM357156v1

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Seq: CP032184.1 Citrobacter freundii strain AR_0116 chromosome, complete genome (5121015 bp)
Overview 1 RT 1: 1769338-1773014 bp 2 RT 2: 4014222-4019613 bp 3 RT 3: 4599032-4602575 bp 4 RT 4: 4775012-4779608 bp Neighborhood of RT #1 [1769338, 1773014] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [4014222, 4019696] PHA02517 RVT-GII GIIM fruct_sucro_rep scrB_fam Neighborhood of RT #3 [4599032, 4602598] PHA02517 RVT-GII GIIM PHA02517 Tn7_Tnp_TnsA_N Neighborhood of RT #4 [4775012, 4779664] PRK09692 RVT-Retrons Psu PRK09678 Feature: gene Location: 1769338-1769763 bp Feature: domain Description: PHA02517 Location: 1769428-1769764 bp Feature: domain Description: PHA0251 7 Location: 1 769428-1 769764 bp Feature: gene Location: 1769732-1770127 bp Feature: gene Location: 1770421-1771944 bp Ori: AXZ47747.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770694-1771426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 770694-1 771 426 bp Feature: domain Description: GIIM Note: maturase Location: 1771501-1771720 bp Feature: domain Description: GIIM Note: maturase Location: 1 771 501 -1 771 720 bp Feature: gene Location: 1772025-1772513 bp Feature: domain Description: PHA02517 Location: 1772028-1772493 bp Feature: domain Description: PHA0251 7 Location: 1 772028-1 772493 bp Feature: gene Location: 1772868-1773014 bp Feature: gene Location: 4014222-4014647 bp Feature: domain Description: PHA02517 Location: 4014312-4014648 bp Feature: domain Description: PHA0251 7 Location: 401 431 2-401 4648 bp Feature: gene Location: 4014574-4015011 bp Feature: gene Location: 4015305-4016828 bp Ori: AXZ49765.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4015578-4016310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 5578-401 631 0 bp Feature: domain Description: GIIM Note: maturase Location: 4016385-4016610 bp Feature: domain Description: GIIM Note: maturase Location: 401 6385-401 661 0 bp Feature: gene Location: 4017262-4018266 bp Ori: AXZ49766.1 Feature: domain Description: fruct_sucro_rep Location: 4017283-4018261 bp Feature: domain Description: fruct_sucro_rep Location: 401 7283-401 8261 bp Feature: gene Location: 4018296-4019696 bp Ori: AXZ49767.1 Feature: domain Description: scrB_fam Location: 4018341-4019613 bp Feature: domain Description: scrB_fam Location: 401 8341 -401 961 3 bp Feature: gene Location: 4599032-4599457 bp Feature: domain Description: PHA02517 Location: 4599122-4599458 bp Feature: domain Description: PHA0251 7 Location: 45991 22-4599458 bp Feature: gene Location: 4599426-4599821 bp Feature: gene Location: 4600115-4601638 bp Ori: AXZ50329.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4600388-4601120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4600388-4601 1 20 bp Feature: domain Description: GIIM Note: maturase Location: 4601195-4601414 bp Feature: domain Description: GIIM Note: maturase Location: 4601 1 95-4601 41 4 bp Feature: gene Location: 4601719-4602207 bp Feature: domain Description: PHA02517 Location: 4601722-4602187 bp Feature: domain Description: PHA0251 7 Location: 4601 722-46021 87 bp Feature: gene Location: 4602200-4602598 bp Ori: AXZ50330.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 4602425-4602575 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 4602425-4602575 bp Feature: gene Location: 4775012-4776193 bp Ori: AXZ50485.1 Feature: domain Description: PRK09692 Location: 4775021-4776170 bp Feature: domain Description: PRK09692 Location: 4775021 -47761 70 bp Feature: gene Location: 4776364-4777008 bp Feature: gene Location: 4777008-4778516 bp Ori: AXZ50487.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4777719-4778274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 477771 9-4778274 bp Feature: gene Location: 4778843-4779409 bp Ori: AXZ50488.1 Feature: domain Description: Psu Location: 4778864-4779404 bp Feature: domain Description: Psu Location: 4778864-4779404 bp Feature: gene Location: 4779425-4779664 bp Ori: AXZ50489.1 Feature: domain Description: PRK09678 Location: 4779428-4779608 bp Feature: domain Description: PRK09678 Location: 4779428-4779608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417), scrB_fam (TIGR01322), Tn7_Tnp_TnsA_N (pfam08722), PRK09692 (Integrase; provisional), RVT-Retrons, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)