myRT

myRT report for GCA_003575005.1_ASM357500v1

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Seq: CP032329.1 Xenorhabdus nematophila strain YL001 chromosome, complete genome (4288892 bp)
Overview 1 RT 1: 19815-23795 bp 2 RT 2: 31388-36258 bp 3 RT 3: 402717-407414 bp 4 RT 4: 700744-704813 bp 5 RT 5: 1231564-1235526 bp 6 RT 6: 1885038-1887961 bp 7 RT 7: 1964962-1968478 bp 8 RT 8: 3172024-3181956 bp 9 RT 9: 3477903-3486000 bp 10 RT 10: 3634422-3640022 bp 11 RT 11: 3750555-3757190 bp 12 RT 12: 4184837-4189732 bp Neighborhood of RT #1 [19815, 23905] COG3440 COG3293 COG3293 RVT-Retrons DDE_3 DDE_Tnp_1_3 Neighborhood of RT #2 [31388, 36258] VI_chp_6 T6SS_TssF group_II_RT_mat RVT-GII Neighborhood of RT #3 [402717, 407428] RVT-GII RVT-GII RVT-GII GIIM DDE_3 HTH_Tnp_IS630 Neighborhood of RT #4 [700744, 704818] DDE_Tnp_IS1 COG3547 RVT-GII Y1_Tnp Neighborhood of RT #5 [1231564, 1235546] COG4994 COG4994 RVT-GII COG3547 PRK10140 Neighborhood of RT #6 [1885038, 1888404] DDE_3 COG3547 RVT-GII Neighborhood of RT #7 [1964962, 1968483] COG3547 GIIM RVT-GII GIIM COG3547 Neighborhood of RT #8 [3172024, 3181976] PRK10635 PRK10509 RVT-GII GIIM RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom RVT-GII EF-Tu COG3547 Neighborhood of RT #9 [3477903, 3486000] PRK09730 MFS_MdtH_MDR_like RVT-GII GIIM DDE_Tnp_Tn3 efflux_Bcr_CflA COG3547 RVT-GII Neighborhood of RT #10 [3634422, 3640022] COG3547 RVT-GII RVT-GII GIIM RVT-GII GIIM COG3547 Neighborhood of RT #11 [3750555, 3757201] HTH_23 InsE PRK14876 RVT-GII valS Neighborhood of RT #12 [4184837, 4189767] COG3293 COG3293 RVT-GII COG3547 AbiEii Feature: gene Location: 19815-20687 bp Ori: AYA39109.1 Feature: domain Description: COG3440 Location: 19830-20679 bp Feature: domain Description: COG3440 Location: 1 9830-20679 bp Feature: gene Location: 21063-21824 bp Ori: AYA39110.1 Feature: domain Description: COG3293 Location: 21072-21381 bp Feature: domain Description: COG3293 Location: 21 072-21 381 bp Feature: domain Description: COG3293 Location: 21429-21807 bp Feature: domain Description: COG3293 Location: 21 429-21 807 bp Feature: gene Location: 21974-22474 bp Ori: AYA39111.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22076-22376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22076-22376 bp Feature: gene Location: 22419-23003 bp Feature: domain Description: DDE_3 Location: 22461-22893 bp Feature: domain Description: DDE_3 Location: 22461 -22893 bp Feature: gene Location: 23021-23905 bp Ori: AYA39112.1 Feature: domain Description: DDE_Tnp_1_3 Location: 23333-23795 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 23333-23795 bp Feature: gene Location: 31388-31903 bp Ori: AYA39122.1 Feature: domain Description: VI_chp_6 Location: 31427-31889 bp Feature: domain Description: VI_chp_6 Location: 31 427-31 889 bp Feature: gene Location: 31938-32948 bp Ori: AYA39123.1 Feature: domain Description: T6SS_TssF Location: 31947-32817 bp Feature: domain Description: T6SS_TssF Location: 31 947-3281 7 bp Feature: gene Location: 33471-34492 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 33474-33546 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 33474-33546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33546-33786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33546-33786 bp Feature: gene Location: 35326-35529 bp Feature: gene Location: 36013-36258 bp Feature: gene Location: 402717-402989 bp Feature: gene Location: 403382-403567 bp Feature: gene Location: 403564-404253 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403768-404254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403768-404254 bp Feature: gene Location: 404374-404568 bp Feature: gene Location: 404658-406066 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405012-405669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40501 2-405669 bp Feature: gene Location: 406129-406596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406135-406306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4061 35-406306 bp Feature: domain Description: GIIM Note: maturase Location: 406387-406582 bp Feature: domain Description: GIIM Note: maturase Location: 406387-406582 bp Feature: gene Location: 406597-407034 bp Ori: AYA39407.1 Feature: domain Description: DDE_3 Location: 406600-406990 bp Feature: domain Description: DDE_3 Location: 406600-406990 bp Feature: gene Location: 407105-407428 bp Ori: AYA39408.1 Feature: domain Description: HTH_Tnp_IS630 Location: 407108-407414 bp Feature: domain Description: HTH_Tnp_IS630 Location: 4071 08-40741 4 bp Feature: gene Location: 700744-700923 bp Ori: AYA39644.1 Feature: domain Description: DDE_Tnp_IS1 Location: 700756-700906 bp Feature: domain Description: DDE_Tnp_IS1 Location: 700756-700906 bp Feature: gene Location: 701619-702641 bp Ori: AYA39645.1 Feature: domain Description: COG3547 Location: 701631-702609 bp Feature: domain Description: COG3547 Location: 701 631 -702609 bp Feature: gene Location: 702808-704182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703093-703324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703093-703324 bp Feature: gene Location: 704253-704456 bp Feature: gene Location: 704672-704818 bp Ori: AYA39647.1 Feature: domain Description: Y1_Tnp Location: 704678-704813 bp Feature: domain Description: Y1 _Tnp Location: 704678-70481 3 bp Feature: gene Location: 1231564-1231788 bp Ori: AYA42443.1 Feature: domain Description: COG4994 Location: 1231576-1231684 bp Feature: domain Description: COG4994 Location: 1 231 576-1 231 684 bp Feature: domain Description: COG4994 Location: 1231693-1231783 bp Feature: domain Description: COG4994 Location: 1 231 693-1 231 783 bp Feature: gene Location: 1232110-1232312 bp Feature: gene Location: 1232383-1233571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1232668-1233127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 232668-1 2331 27 bp Feature: gene Location: 1233738-1234722 bp Feature: domain Description: COG3547 Location: 1233750-1234554 bp Feature: domain Description: COG3547 Location: 1 233750-1 234554 bp Feature: gene Location: 1235043-1235546 bp Ori: AYA40023.1 Feature: domain Description: PRK10140 Location: 1235049-1235526 bp Feature: domain Description: PRK1 01 40 Location: 1 235049-1 235526 bp Feature: gene Location: 1885038-1885574 bp Feature: domain Description: DDE_3 Location: 1885083-1885485 bp Feature: domain Description: DDE_3 Location: 1 885083-1 885485 bp Feature: gene Location: 1886076-1887100 bp Feature: domain Description: COG3547 Location: 1886088-1886883 bp Feature: domain Description: COG3547 Location: 1 886088-1 886883 bp Feature: gene Location: 1887268-1888404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1887502-1887961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 887502-1 887961 bp Feature: gene Location: 1964962-1965552 bp Feature: domain Description: COG3547 Location: 1965028-1965520 bp Feature: domain Description: COG3547 Location: 1 965028-1 965520 bp Feature: gene Location: 1965617-1965982 bp Feature: domain Description: GIIM Note: maturase Location: 1965662-1965866 bp Feature: domain Description: GIIM Note: maturase Location: 1 965662-1 965866 bp Feature: gene Location: 1966258-1967652 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1966612-1967113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96661 2-1 9671 1 3 bp Feature: domain Description: GIIM Note: maturase Location: 1967335-1967554 bp Feature: domain Description: GIIM Note: maturase Location: 1 967335-1 967554 bp Feature: gene Location: 1967742-1967936 bp Feature: gene Location: 1968055-1968483 bp Feature: domain Description: COG3547 Location: 1968067-1968478 bp Feature: domain Description: COG3547 Location: 1 968067-1 968478 bp Feature: gene Location: 3172024-3172500 bp Ori: AYA41465.1 Feature: domain Description: PRK10635 Location: 3172027-3172495 bp Feature: domain Description: PRK1 0635 Location: 31 72027-31 72495 bp Feature: gene Location: 3172576-3172770 bp Ori: AYA41466.1 Feature: domain Description: PRK10509 Location: 3172579-3172768 bp Feature: domain Description: PRK1 0509 Location: 31 72579-31 72768 bp Feature: gene Location: 3173027-3173695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3173135-3173264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 731 35-31 73264 bp Feature: domain Description: GIIM Note: maturase Location: 3173318-3173543 bp Feature: domain Description: GIIM Note: maturase Location: 31 7331 8-31 73543 bp Feature: gene Location: 3173662-3175071 bp Ori: AYA41467.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3174016-3174673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 7401 6-31 74673 bp Feature: domain Description: GIIM Note: maturase Location: 3174754-3174973 bp Feature: domain Description: GIIM Note: maturase Location: 31 74754-31 74973 bp Feature: gene Location: 3175161-3175355 bp Feature: gene Location: 3175680-3176009 bp Feature: gene Location: 3176153-3177904 bp Feature: domain Description: Resolvase Location: 3176165-3176357 bp Feature: domain Description: Resolvase Location: 31 761 65-31 76357 bp Feature: domain Description: Recombinase Location: 3176690-3177056 bp Feature: domain Description: Recombinase Location: 31 76690-31 77056 bp Feature: domain Description: Zn_ribbon_recom Location: 3177101-3177284 bp Feature: domain Description: Zn_ribbon_recom Location: 31 771 01 -31 77284 bp Feature: gene Location: 3178030-3178515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3178360-3178513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 78360-31 7851 3 bp Feature: gene Location: 3179008-3180192 bp Ori: AYA41469.1 Gene: tuf Feature: domain Description: EF-Tu Location: 3179011-3180187 bp Feature: domain Description: EF-Tu Location: 31 7901 1 -31 801 87 bp Feature: gene Location: 3181020-3181976 bp Ori: AYA41470.1 Feature: domain Description: COG3547 Location: 3181041-3181956 bp Feature: domain Description: COG3547 Location: 31 81 041 -31 81 956 bp Feature: gene Location: 3477903-3478652 bp Ori: AYA41729.1 Feature: domain Description: PRK09730 Location: 3477915-3478650 bp Feature: domain Description: PRK09730 Location: 347791 5-3478650 bp Feature: gene Location: 3478656-3478961 bp Ori: AYA41730.1 Feature: domain Description: MFS_MdtH_MDR_like Location: 3478677-3478926 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 3478677-3478926 bp Feature: gene Location: 3479011-3480393 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3479347-3479992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3479347-3479992 bp Feature: domain Description: GIIM Note: maturase Location: 3480073-3480274 bp Feature: domain Description: GIIM Note: maturase Location: 3480073-3480274 bp Feature: gene Location: 3480613-3480798 bp Feature: gene Location: 3480836-3481039 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3480839-3480974 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3480839-3480974 bp Feature: gene Location: 3481333-3482526 bp Ori: AYA41732.1 Gene: bcr/cflA Feature: domain Description: efflux_Bcr_CflA Location: 3481378-3482503 bp Feature: domain Description: efflux_Bcr_CflA Location: 3481 378-3482503 bp Feature: gene Location: 3482789-3483773 bp Feature: domain Description: COG3547 Location: 3482801-3483605 bp Feature: domain Description: COG3547 Location: 3482801 -3483605 bp Feature: gene Location: 3483943-3485131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484228-3484687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484228-3484687 bp Feature: gene Location: 3485202-3485405 bp Feature: gene Location: 3485755-3486000 bp Feature: gene Location: 3634422-3634838 bp Feature: domain Description: COG3547 Location: 3634425-3634833 bp Feature: domain Description: COG3547 Location: 3634425-3634833 bp Feature: gene Location: 3635195-3635380 bp Feature: gene Location: 3635377-3636066 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635581-3636067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635581 -3636067 bp Feature: gene Location: 3636187-3636381 bp Feature: gene Location: 3636471-3637880 bp Ori: AYA41860.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3636825-3637482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3636825-3637482 bp Feature: domain Description: GIIM Note: maturase Location: 3637563-3637782 bp Feature: domain Description: GIIM Note: maturase Location: 3637563-3637782 bp Feature: gene Location: 3637943-3638374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637949-3638120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637949-36381 20 bp Feature: domain Description: GIIM Note: maturase Location: 3638201-3638369 bp Feature: domain Description: GIIM Note: maturase Location: 3638201 -3638369 bp Feature: gene Location: 3638587-3639177 bp Feature: domain Description: COG3547 Location: 3638659-3639145 bp Feature: domain Description: COG3547 Location: 3638659-36391 45 bp Feature: gene Location: 3639369-3640022 bp Feature: gene Location: 3750555-3751187 bp Ori: AYA41948.1 Feature: domain Description: HTH_23 Location: 3750585-3750687 bp Feature: domain Description: HTH_23 Location: 3750585-3750687 bp Feature: domain Description: InsE Location: 3750825-3751002 bp Feature: domain Description: InsE Location: 3750825-3751 002 bp Feature: gene Location: 3751272-3752186 bp Feature: domain Description: PRK14876 Location: 3751275-3752172 bp Feature: domain Description: PRK1 4876 Location: 3751 275-37521 72 bp Feature: gene Location: 3752465-3753795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3752750-3753188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3752750-37531 88 bp Feature: gene Location: 3753866-3754069 bp Feature: gene Location: 3754304-3757201 bp Ori: AYA41950.1 Feature: domain Description: valS Location: 3754343-3757190 bp Feature: domain Description: valS Location: 3754343-37571 90 bp Feature: gene Location: 4184837-4185598 bp Ori: AYA42299.1 Feature: domain Description: COG3293 Location: 4184915-4185146 bp Feature: domain Description: COG3293 Location: 41 8491 5-41 851 46 bp Feature: domain Description: COG3293 Location: 4185203-4185581 bp Feature: domain Description: COG3293 Location: 41 85203-41 85581 bp Feature: gene Location: 4185876-4186078 bp Feature: gene Location: 4186149-4187483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4186434-4187121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 86434-41 871 21 bp Feature: gene Location: 4187652-4188674 bp Ori: AYA42300.1 Feature: domain Description: COG3547 Location: 4187664-4188642 bp Feature: domain Description: COG3547 Location: 41 87664-41 88642 bp Feature: gene Location: 4188922-4189767 bp Ori: AYA42301.1 Feature: domain Description: AbiEii Location: 4188925-4189732 bp Feature: domain Description: AbiEii Location: 41 88925-41 89732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3440 (Predicted restriction endonuclease ), COG3293 (Transposase ), RVT-Retrons, DDE_3 (pfam13358), DDE_Tnp_1_3 (pfam13612), VI_chp_6 (TIGR03359), T6SS_TssF (pfam05947), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)
HTH_Tnp_IS630 (pfam01710), DDE_Tnp_IS1 (pfam03400), COG3547 (Transposase ), Y1_Tnp (pfam01797), COG4994 (Uncharacterized protein ), PRK10140 (N-acetyltransferase), PRK10635 (bacterioferritin; Provisional), PRK10509 (bacterioferritin-associated ferredoxin; Provisional), Resolvase (smart00857), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), EF-Tu (TIGR00485), PRK09730 (SDR family oxidoreductase), MFS_MdtH_MDR_like (cd17329), DDE_Tnp_Tn3 (pfam01526), efflux_Bcr_CflA (TIGR00710), HTH_23 (pfam13384), InsE (COG2963), PRK14876 (conjugal transfer mating pair stabilization protein TraN; Provisional), valS (TIGR00422)
AbiEii (pfam08843)