myRT

myRT report for GCA_003584585.1_ASM358458v1

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Seq: AP018671.1 Klebsiella pneumoniae GSU10-3 DNA, complete genome (5478620 bp)
Overview 1 RT 1: 1235173-1240906 bp 2 RT 2: 1400060-1403424 bp 3 RT 3: 1850011-1856482 bp 4 RT 4: 1871255-1876185 bp 5 RT 5: 3300043-3305407 bp 6 RT 6: 3372875-3382673 bp 7 RT 7: 3695300-3700987 bp 8 RT 8: 3703185-3708565 bp Neighborhood of RT #1 [1235173, 1240911] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1400060, 1403501] RVT-GII Terminase_2 Neighborhood of RT #3 [1850011, 1856496] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1871255, 1876185] GAF GGDEF STKc_PknB_like RVT-Retrons IS5 Neighborhood of RT #5 [3300043, 3305463] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3372875, 3382673] PRK10597 RVT-GII PRK05318 RVT-GII AbiH Neighborhood of RT #7 [3695300, 3701064] DinI RVT-GII Phage_GPA dam Neighborhood of RT #8 [3703185, 3708585] Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1235173-1236024 bp Ori: BBE02495.1 Feature: domain Description: dam Location: 1235176-1235947 bp Feature: domain Description: dam Location: 1 2351 76-1 235947 bp Feature: gene Location: 1236021-1238405 bp Ori: BBE02496.1 Feature: domain Description: Phage_GPA Location: 1236585-1237551 bp Feature: domain Description: Phage_GPA Location: 1 236585-1 237551 bp Feature: gene Location: 1238883-1240370 bp Ori: BBE02497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239288-1239978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 239288-1 239978 bp Feature: gene Location: 1240478-1240666 bp Feature: gene Location: 1240678-1240911 bp Ori: BBE02499.1 Feature: domain Description: DinI Location: 1240723-1240906 bp Feature: domain Description: DinI Location: 1 240723-1 240906 bp Feature: gene Location: 1400060-1400266 bp Feature: gene Location: 1400259-1400597 bp Feature: gene Location: 1400694-1402181 bp Ori: BBE02662.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401099-1401789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 401 099-1 401 789 bp Feature: gene Location: 1402582-1402839 bp Feature: gene Location: 1402908-1403501 bp Ori: BBE02664.1 Feature: domain Description: Terminase_2 Location: 1402962-1403424 bp Feature: domain Description: Terminase_2 Location: 1 402962-1 403424 bp Feature: gene Location: 1850011-1851435 bp Ori: BBE03055.1 Gene: sbcB Feature: domain Description: SbcB Location: 1850017-1851433 bp Feature: domain Description: SbcB Location: 1 85001 7-1 851 433 bp Feature: gene Location: 1851730-1852779 bp Ori: BBE03056.1 Gene: dacD Feature: domain Description: dacD Location: 1851733-1852774 bp Feature: domain Description: dacD Location: 1 851 733-1 852774 bp Feature: gene Location: 1853297-1854784 bp Ori: BBE03057.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853702-1854392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 853702-1 854392 bp Feature: gene Location: 1854866-1855339 bp Ori: BBE03058.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1854869-1855328 bp Feature: domain Description: PRK1 001 6 Location: 1 854869-1 855328 bp Feature: gene Location: 1855438-1856496 bp Ori: BBE03059.1 Feature: domain Description: YccC Location: 1855444-1856482 bp Feature: domain Description: YccC Location: 1 855444-1 856482 bp Feature: gene Location: 1871255-1872226 bp Ori: BBE03077.1 Feature: domain Description: GAF Location: 1871339-1871720 bp Feature: domain Description: GAF Location: 1 871 339-1 871 720 bp Feature: domain Description: GGDEF Location: 1871753-1872212 bp Feature: domain Description: GGDEF Location: 1 871 753-1 87221 2 bp Feature: gene Location: 1872223-1873326 bp Ori: BBE03078.1 Feature: domain Description: STKc_PknB_like Location: 1872355-1872796 bp Feature: domain Description: STKc_PknB_like Location: 1 872355-1 872796 bp Feature: gene Location: 1873885-1874919 bp Ori: BBE03079.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1874002-1874530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 874002-1 874530 bp Feature: gene Location: 1874977-1875957 bp Ori: BBE03080.1 Feature: domain Description: IS5 Location: 1875166-1875943 bp Feature: domain Description: IS5 Location: 1 8751 66-1 875943 bp Feature: gene Location: 1876003-1876185 bp Feature: gene Location: 3300043-3301308 bp Ori: BBE04486.1 Gene: umuC Feature: domain Description: umuC Location: 3300046-3301306 bp Feature: domain Description: umuC Location: 3300046-3301 306 bp Feature: gene Location: 3301311-3301730 bp Ori: BBE04487.1 Feature: domain Description: PRK10276 Location: 3301314-3301725 bp Feature: domain Description: PRK1 0276 Location: 3301 31 4-3301 725 bp Feature: gene Location: 3301809-3303296 bp Ori: BBE04488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3302214-3302904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330221 4-3302904 bp Feature: gene Location: 3303911-3304153 bp Ori: BBE04489.1 Gene: msgA Feature: domain Description: DinI Location: 3303962-3304142 bp Feature: domain Description: DinI Location: 3303962-33041 42 bp Feature: gene Location: 3304324-3305463 bp Ori: BBE04490.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3304507-3305407 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3304507-3305407 bp Feature: gene Location: 3372875-3373165 bp Feature: gene Location: 3373177-3373410 bp Ori: BBE04563.1 Feature: domain Description: PRK10597 Location: 3373180-3373405 bp Feature: domain Description: PRK1 0597 Location: 33731 80-3373405 bp Feature: gene Location: 3373489-3374976 bp Ori: BBE04564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373894-3374584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373894-3374584 bp Feature: gene Location: 3375814-3377175 bp Ori: BBE04565.1 Feature: domain Description: PRK05318 Location: 3375838-3377137 bp Feature: domain Description: PRK0531 8 Location: 3375838-33771 37 bp Feature: gene Location: 3377349-3378107 bp Feature: gene Location: 3378100-3379587 bp Ori: BBE04567.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3378505-3379195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3378505-33791 95 bp Feature: gene Location: 3380222-3381193 bp Ori: BBE04568.1 Feature: domain Description: AbiH Location: 3380333-3381101 bp Feature: domain Description: AbiH Location: 3380333-3381 1 01 bp Feature: gene Location: 3381282-3382673 bp Feature: gene Location: 3695300-3695533 bp Ori: BBE04862.1 Feature: domain Description: DinI Location: 3695342-3695528 bp Feature: domain Description: DinI Location: 3695342-3695528 bp Feature: gene Location: 3695544-3695840 bp Feature: gene Location: 3695833-3697320 bp Ori: BBE04864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696238-3696928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696238-3696928 bp Feature: gene Location: 3697796-3700210 bp Ori: BBE04865.1 Feature: domain Description: Phage_GPA Location: 3698360-3699326 bp Feature: domain Description: Phage_GPA Location: 3698360-3699326 bp Feature: gene Location: 3700207-3701064 bp Ori: BBE04866.1 Feature: domain Description: dam Location: 3700210-3700987 bp Feature: domain Description: dam Location: 370021 0-3700987 bp Feature: gene Location: 3703185-3703889 bp Ori: BBE04873.1 Gene: cI Feature: domain Description: Phage_CI_repr Location: 3703350-3703542 bp Feature: domain Description: Phage_CI_repr Location: 3703350-3703542 bp Feature: domain Description: Phage_CI_C Location: 3703569-3703863 bp Feature: domain Description: Phage_CI_C Location: 3703569-3703863 bp Feature: gene Location: 3703901-3704845 bp Feature: gene Location: 3704944-3706431 bp Ori: BBE04875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3705349-3706039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3705349-3706039 bp Feature: gene Location: 3706847-3707899 bp Ori: BBE04876.1 Feature: domain Description: int Location: 3706850-3707849 bp Feature: domain Description: int Location: 3706850-3707849 bp Feature: gene Location: 3708022-3708585 bp Ori: BBE04877.1 Feature: domain Description: YbjK Location: 3708028-3708565 bp Feature: domain Description: YbjK Location: 3708028-3708565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Terminase_2 (pfam03592), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), GAF (smart00065)
GGDEF (TIGR00254), STKc_PknB_like (cd14014), RVT-Retrons, IS5 (COG3039), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), AbiH (pfam14253)
Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226)