myRT

myRT report for GCA_003584665.1_ASM358466v1

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Seq: AP018535.1 Lachnospiraceae bacterium Choco86 DNA, complete genome (2785030 bp)
Overview 1 RT 1: 317493-323595 bp 2 RT 2: 2107117-2119917 bp 3 RT 3: 2138245-2143669 bp Neighborhood of RT #1 [317493, 323624] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII VirD4 DUF3801 Neighborhood of RT #2 [2107117, 2119991] YodL LPD16 DUF4316 LPD25 RVT_N RVT-GII YkfC YtxK COG4646 HELICc Neighborhood of RT #3 [2138245, 2143701] Maff2 TraG-D_C RVT-GII VirD4 VirD4 DUF3801 Feature: gene Location: 317493-319373 bp Feature: domain Description: SR_TndX_transposase Location: 317517-317925 bp Feature: domain Description: SR_TndX_transposase Location: 31 751 7-31 7925 bp Feature: domain Description: Recombinase Location: 318024-318387 bp Feature: domain Description: Recombinase Location: 31 8024-31 8387 bp Feature: domain Description: Zn_ribbon_recom Location: 318429-318612 bp Feature: domain Description: Zn_ribbon_recom Location: 31 8429-31 861 2 bp Feature: domain Description: DUF4368 Location: 318897-319083 bp Feature: domain Description: DUF4368 Location: 31 8897-31 9083 bp Feature: gene Location: 319434-319694 bp Feature: gene Location: 319821-321731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320151-320895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201 51 -320895 bp Feature: gene Location: 322357-323157 bp Feature: domain Description: VirD4 Location: 322579-323095 bp Feature: domain Description: VirD4 Location: 322579-323095 bp Feature: gene Location: 323154-323624 bp Feature: domain Description: DUF3801 Location: 323232-323595 bp Feature: domain Description: DUF3801 Location: 323232-323595 bp Feature: gene Location: 2107117-2109915 bp Feature: domain Description: YodL Location: 2107936-2108230 bp Feature: domain Description: YodL Location: 21 07936-21 08230 bp Feature: domain Description: LPD16 Location: 2108260-2108482 bp Feature: domain Description: LPD1 6 Location: 21 08260-21 08482 bp Feature: domain Description: DUF4316 Location: 2108530-2108617 bp Feature: domain Description: DUF431 6 Location: 21 08530-21 0861 7 bp Feature: domain Description: LPD25 Location: 2109223-2109514 bp Feature: domain Description: LPD25 Location: 21 09223-21 0951 4 bp Feature: gene Location: 2109958-2110953 bp Feature: gene Location: 2110954-2112624 bp Feature: domain Description: RVT_N Location: 2110999-2111242 bp Feature: domain Description: RVT_N Location: 21 1 0999-21 1 1 242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2111287-2111935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 287-21 1 1 935 bp Feature: domain Description: YkfC Location: 2112043-2112238 bp Feature: domain Description: YkfC Location: 21 1 2043-21 1 2238 bp Feature: gene Location: 2112700-2112846 bp Feature: gene Location: 2113203-2119991 bp Feature: domain Description: YtxK Location: 2116014-2116866 bp Feature: domain Description: YtxK Location: 21 1 601 4-21 1 6866 bp Feature: domain Description: COG4646 Location: 2116929-2119494 bp Feature: domain Description: COG4646 Location: 21 1 6929-21 1 9494 bp Feature: domain Description: HELICc Location: 2119557-2119917 bp Feature: domain Description: HELICc Location: 21 1 9557-21 1 991 7 bp Feature: gene Location: 2138245-2138460 bp Feature: domain Description: Maff2 Location: 2138248-2138455 bp Feature: domain Description: Maff2 Location: 21 38248-21 38455 bp Feature: gene Location: 2138584-2139606 bp Feature: domain Description: TraG-D_C Location: 2139052-2139406 bp Feature: domain Description: TraG-D_C Location: 21 39052-21 39406 bp Feature: gene Location: 2139748-2141658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2140078-2140822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 40078-21 40822 bp Feature: gene Location: 2142284-2143213 bp Feature: domain Description: VirD4 Location: 2142557-2142902 bp Feature: domain Description: VirD4 Location: 21 42557-21 42902 bp Feature: domain Description: VirD4 Location: 2142998-2143151 bp Feature: domain Description: VirD4 Location: 21 42998-21 431 51 bp Feature: gene Location: 2143210-2143701 bp Feature: domain Description: DUF3801 Location: 2143276-2143669 bp Feature: domain Description: DUF3801 Location: 21 43276-21 43669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, VirD4 (COG3505), DUF3801 (pfam12687), YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195)
LPD25 (pfam18840), RVT_N (pfam13655), YkfC (COG3344), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), Maff2 (pfam12750), TraG-D_C (pfam12696)