myRT

myRT report for GCA_003584705.1_ASM358470v1

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Seq: AP018536.1 Lachnospiraceae bacterium GAM79 DNA, complete genome (4078671 bp)
Overview 1 RT 1: 297305-302483 bp 2 RT 2: 1790032-1792376 bp 3 RT 3: 2430963-2443834 bp 4 RT 4: 3013282-3018946 bp 5 RT 5: 3788163-3793522 bp Neighborhood of RT #1 [297305, 302548] RVT-GII HNHc VirB11 TadB Neighborhood of RT #2 [1790032, 1792465] Avd_like RVT-DGRs Phage_holin_4_1 Neighborhood of RT #3 [2430963, 2443834] DEDD_Tnp_IS110 Transposase_20 RimL RVT-GII GIIM Tar MA TraG-D_C YtxK COG4646 RVT-GII DUF3801 Neighborhood of RT #4 [3013282, 3019005] GIY-YIG_COG3410 DUF2075 RVT-Retrons UDG_MUG_like OafA Neighborhood of RT #5 [3788163, 3793575] ABC_trans_CmpB ABC_trans_CmpB PilZ RVT-GII GIIM ACD_LpsHSP_like DUF4352 Feature: gene Location: 297305-297898 bp Feature: gene Location: 297989-298129 bp Feature: gene Location: 298632-300458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298947-299646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298947-299646 bp Feature: domain Description: HNHc Note: nucleases Location: 300195-300336 bp Feature: domain Description: HNHc Note: nucleases Location: 3001 95-300336 bp Feature: gene Location: 300507-301622 bp Feature: domain Description: VirB11 Location: 300573-301302 bp Feature: domain Description: VirB1 1 Location: 300573-301 302 bp Feature: gene Location: 301619-302548 bp Feature: domain Description: TadB Location: 301784-302483 bp Feature: domain Description: TadB Location: 301 784-302483 bp Feature: gene Location: 1790032-1790388 bp Feature: domain Description: Avd_like Location: 1790062-1790368 bp Feature: domain Description: Avd_like Location: 1 790062-1 790368 bp Feature: gene Location: 1790460-1790606 bp Feature: gene Location: 1790715-1791776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1790943-1791645 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 790943-1 791 645 bp Feature: gene Location: 1791801-1791980 bp Feature: gene Location: 1791977-1792465 bp Feature: domain Description: Phage_holin_4_1 Location: 1792016-1792376 bp Feature: domain Description: Phage_holin_4_1 Location: 1 79201 6-1 792376 bp Feature: gene Location: 2430963-2432363 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2431098-2431575 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2431 098-2431 575 bp Feature: domain Description: Transposase_20 Location: 2431926-2432202 bp Feature: domain Description: Transposase_20 Location: 2431 926-2432202 bp Feature: gene Location: 2432641-2433246 bp Feature: domain Description: RimL Location: 2432668-2432968 bp Feature: domain Description: RimL Location: 2432668-2432968 bp Feature: gene Location: 2433326-2434408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433335-2433950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433335-2433950 bp Feature: domain Description: GIIM Note: maturase Location: 2434010-2434220 bp Feature: domain Description: GIIM Note: maturase Location: 243401 0-2434220 bp Feature: gene Location: 2434444-2436129 bp Feature: domain Description: Tar Location: 2434849-2435311 bp Feature: domain Description: Tar Location: 2434849-243531 1 bp Feature: domain Description: MA Location: 2435407-2436124 bp Feature: domain Description: MA Location: 2435407-24361 24 bp Feature: gene Location: 2436611-2437507 bp Feature: gene Location: 2438754-2441396 bp Feature: domain Description: TraG-D_C Location: 2438859-2439168 bp Feature: domain Description: TraG-D_C Location: 2438859-24391 68 bp Feature: domain Description: YtxK Location: 2440119-2440509 bp Feature: domain Description: YtxK Location: 24401 1 9-2440509 bp Feature: domain Description: COG4646 Location: 2440566-2441325 bp Feature: domain Description: COG4646 Location: 2440566-2441 325 bp Feature: gene Location: 2441406-2441672 bp Feature: gene Location: 2441614-2442132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441698-2441917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441 698-2441 91 7 bp Feature: gene Location: 2442329-2442940 bp Feature: domain Description: DUF3801 Location: 2442431-2442890 bp Feature: domain Description: DUF3801 Location: 2442431 -2442890 bp Feature: gene Location: 2443043-2443834 bp Feature: gene Location: 3013282-3015039 bp Feature: domain Description: GIY-YIG_COG3410 Location: 3013399-3013663 bp Feature: domain Description: GIY-YIG_COG341 0 Location: 301 3399-301 3663 bp Feature: domain Description: DUF2075 Location: 3013900-3014986 bp Feature: domain Description: DUF2075 Location: 301 3900-301 4986 bp Feature: gene Location: 3015673-3015864 bp Feature: gene Location: 3015898-3016872 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3016042-3016645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 301 6042-301 6645 bp Feature: gene Location: 3017298-3017795 bp Feature: domain Description: UDG_MUG_like Location: 3017331-3017739 bp Feature: domain Description: UDG_MUG_like Location: 301 7331 -301 7739 bp Feature: gene Location: 3017782-3019005 bp Feature: domain Description: OafA Location: 3017806-3018946 bp Feature: domain Description: OafA Location: 301 7806-301 8946 bp Feature: gene Location: 3788163-3789530 bp Feature: domain Description: ABC_trans_CmpB Location: 3788193-3788652 bp Feature: domain Description: ABC_trans_CmpB Location: 37881 93-3788652 bp Feature: domain Description: ABC_trans_CmpB Location: 3788919-3789381 bp Feature: domain Description: ABC_trans_CmpB Location: 378891 9-3789381 bp Feature: gene Location: 3789562-3790224 bp Feature: domain Description: PilZ Location: 3789871-3790174 bp Feature: domain Description: PilZ Location: 3789871 -37901 74 bp Feature: gene Location: 3790320-3791714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3790638-3791262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3790638-3791 262 bp Feature: domain Description: GIIM Note: maturase Location: 3791319-3791541 bp Feature: domain Description: GIIM Note: maturase Location: 3791 31 9-3791 541 bp Feature: gene Location: 3792224-3792688 bp Feature: domain Description: ACD_LpsHSP_like Location: 3792353-3792635 bp Feature: domain Description: ACD_LpsHSP_like Location: 3792353-3792635 bp Feature: gene Location: 3792994-3793575 bp Feature: domain Description: DUF4352 Location: 3793165-3793522 bp Feature: domain Description: DUF4352 Location: 37931 65-3793522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirB11 (TIGR02788), TadB (COG4965), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RimL (COG1670)
GIIM (pfam08388), Tar (COG0840), MA (smart00283), TraG-D_C (pfam12696), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF3801 (pfam12687), GIY-YIG_COG3410 (cd10439), DUF2075 (pfam09848), RVT-Retrons
UDG_MUG_like, OafA (COG1835), ABC_trans_CmpB (pfam06541), PilZ (pfam07238), ACD_LpsHSP_like (cd06471), DUF4352 (pfam11611)