myRT

myRT report for GCA_003586045.1_E.coli_isolate

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Seq: CP019954.1 Escherichia coli M8 plasmid unnamed1, complete sequence (160021 bp)
Overview 1 RT 1: 84087-88304 bp 2 RT 2: 104772-110844 bp 3 RT 3: 114149-118069 bp Neighborhood of RT #1 [84087, 88304] HTH_23 InsE RVT_N RVT-GII YkfC HNHc Neighborhood of RT #2 [104772, 110846] COG4584 COG4584 COG3464 HTH_29 COG3464 RVT_N RVT-GII GIIM HNHc PRK13699 Neighborhood of RT #3 [114149, 118071] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 84087-84737 bp Ori: AQW76453.1 Feature: domain Description: HTH_23 Location: 84138-84237 bp Feature: domain Description: HTH_23 Location: 841 38-84237 bp Feature: domain Description: InsE Location: 84360-84714 bp Feature: domain Description: InsE Location: 84360-8471 4 bp Feature: gene Location: 84819-85591 bp Feature: gene Location: 85668-87392 bp Ori: AQW76454.1 Feature: domain Description: RVT_N Location: 85725-85962 bp Feature: domain Description: RVT_N Location: 85725-85962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86013-86661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8601 3-86661 bp Feature: domain Description: YkfC Location: 86793-86949 bp Feature: domain Description: YkfC Location: 86793-86949 bp Feature: domain Description: HNHc Note: nucleases Location: 87177-87336 bp Feature: domain Description: HNHc Note: nucleases Location: 871 77-87336 bp Feature: gene Location: 87655-87951 bp Feature: gene Location: 88035-88304 bp Feature: gene Location: 104772-106016 bp Ori: AQW76472.1 Feature: domain Description: COG4584 Location: 104832-105366 bp Feature: domain Description: COG4584 Location: 1 04832-1 05366 bp Feature: domain Description: COG4584 Location: 105486-105885 bp Feature: domain Description: COG4584 Location: 1 05486-1 05885 bp Feature: gene Location: 106057-107676 bp Ori: AQW76473.1 Feature: domain Description: COG3464 Location: 106132-106948 bp Feature: domain Description: COG3464 Location: 1 061 32-1 06948 bp Feature: domain Description: HTH_29 Location: 106963-107050 bp Feature: domain Description: HTH_29 Location: 1 06963-1 07050 bp Feature: domain Description: COG3464 Location: 107152-107662 bp Feature: domain Description: COG3464 Location: 1 071 52-1 07662 bp Feature: gene Location: 107913-109613 bp Ori: AQW76474.1 Feature: domain Description: RVT_N Location: 107967-108210 bp Feature: domain Description: RVT_N Location: 1 07967-1 0821 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108255-108891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08255-1 08891 bp Feature: domain Description: GIIM Note: maturase Location: 108942-109176 bp Feature: domain Description: GIIM Note: maturase Location: 1 08942-1 091 76 bp Feature: domain Description: HNHc Note: nucleases Location: 109407-109557 bp Feature: domain Description: HNHc Note: nucleases Location: 1 09407-1 09557 bp Feature: gene Location: 109643-109887 bp Feature: gene Location: 110193-110846 bp Ori: AQW76475.1 Feature: domain Description: PRK13699 Location: 110238-110844 bp Feature: domain Description: PRK1 3699 Location: 1 1 0238-1 1 0844 bp Feature: gene Location: 114149-114228 bp Feature: gene Location: 114390-114596 bp Feature: gene Location: 115245-117146 bp Ori: AQW76482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115512-116343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 551 2-1 1 6343 bp Feature: domain Description: Intron_maturas2 Location: 116457-116715 bp Feature: domain Description: Intron_maturas2 Location: 1 1 6457-1 1 671 5 bp Feature: domain Description: HNHc Note: nucleases Location: 116889-117051 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 6889-1 1 7051 bp Feature: gene Location: 117296-117781 bp Ori: AQW76483.1 Feature: domain Description: PRK13732 Location: 117299-117779 bp Feature: domain Description: PRK1 3732 Location: 1 1 7299-1 1 7779 bp Feature: gene Location: 117838-118071 bp Ori: AQW76484.1 Feature: domain Description: DUF905 Location: 117868-118069 bp Feature: domain Description: DUF905 Location: 1 1 7868-1 1 8069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG4584 (Transposase ), COG3464 (Transposase ), HTH_29 (pfam13551), GIIM (pfam08388)
PRK13699 (putative methylase; Provisional), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP019953.1 Escherichia coli M8 chromosome, complete genome (5108794 bp)
Overview 1 RT 1: 2975167-2980151 bp 2 RT 2: 4759038-4767043 bp Neighborhood of RT #1 [2975167, 2980180] HcaE PRK10069 RVT-GII GIIM PRK09965 PRK06200 Neighborhood of RT #2 [4759038, 4767054] uvrA PRK09010 RVT-GII GIIM YjcB YjcC Feature: gene Location: 2975167-2976528 bp Ori: AQW74114.1 Feature: domain Description: HcaE Location: 2975224-2976505 bp Feature: domain Description: HcaE Location: 2 9752 2 4-2 976505 bp Feature: gene Location: 2976525-2976983 bp Ori: AQW74115.1 Feature: domain Description: PRK10069 Location: 2976531-2976981 bp Feature: domain Description: PRK10069 Location: 2 976531-2 976981 bp Feature: gene Location: 2977085-2978422 bp Ori: AQW74116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2977388-2978021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 977388-2 97802 1 bp Feature: domain Description: GIIM Note: maturase Location: 2978093-2978315 bp Feature: domain Description: GIIM Note: maturase Location: 2 978093-2 978315 bp Feature: gene Location: 2979051-2979371 bp Ori: AQW74117.1 Feature: domain Description: PRK09965 Location: 2979054-2979369 bp Feature: domain Description: PRK09965 Location: 2 979054-2 979369 bp Feature: gene Location: 2979368-2980180 bp Ori: AQW74118.1 Feature: domain Description: PRK06200 Location: 2979371-2980151 bp Feature: domain Description: PRK062 00 Location: 2 979371-2 980151 bp Feature: gene Location: 4759038-4761860 bp Ori: AQW75824.1 Feature: domain Description: uvrA Location: 4759041-4761858 bp Feature: domain Description: uvrA Location: 4759041-4761858 bp Feature: gene Location: 4762114-4762650 bp Ori: AQW75825.1 Feature: domain Description: PRK09010 Location: 4762117-4762648 bp Feature: domain Description: PRK09010 Location: 4762 117-4762 648 bp Feature: gene Location: 4763214-4764551 bp Ori: AQW75826.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4763517-4764150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4763517-4764150 bp Feature: domain Description: GIIM Note: maturase Location: 4764222-4764444 bp Feature: domain Description: GIIM Note: maturase Location: 47642 2 2 -4764444 bp Feature: gene Location: 4764757-4764981 bp Ori: AQW75827.1 Feature: domain Description: YjcB Location: 4764760-4764970 bp Feature: domain Description: YjcB Location: 4764760-4764970 bp Feature: gene Location: 4765468-4767054 bp Ori: AQW75828.1 Feature: domain Description: YjcC Location: 4765471-4767043 bp Feature: domain Description: YjcC Location: 4765471-4767043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HcaE (COG4638), PRK10069 (3-phenylpropionate/cinnamic acid dioxygenase subunit beta), RVT-GII, GIIM (pfam08388), PRK09965 (3-phenylpropionate dioxygenase ferredoxin subunit; Provisional), PRK06200 (2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional), uvrA (PRK00349), PRK09010 (single-stranded DNA-binding protein; Provisional), YjcB (pfam15940), YjcC (COG4943)