myRT

myRT report for GCA_003591575.1_ASM359157v1

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Seq: CP024082.1 Vibrio cholerae strain FORC_073 chromosome 1, complete sequence (3031091 bp)
Overview 1 RT 1: 261648-267716 bp 2 RT 2: 550478-556327 bp Neighborhood of RT #1 [261648, 267716] groES groEL RVT_N RVT-GII GIIM HNHc DUF2188 Neighborhood of RT #2 [550478, 556353] COG3950 DDE_Tnp_1_assoc YhhI YhhI RVT-Retrons PRK10621 LysR Feature: gene Location: 261648-261938 bp Ori: AYC04216.1 Feature: domain Description: groES Location: 261651-261936 bp Feature: domain Description: groES Location: 261 651 -261 936 bp Feature: gene Location: 261992-263626 bp Ori: AYC04217.1 Feature: domain Description: groEL Location: 261998-263621 bp Feature: domain Description: groEL Location: 261 998-263621 bp Feature: gene Location: 264749-266422 bp Ori: AYC04218.1 Feature: domain Description: RVT_N Location: 264794-265037 bp Feature: domain Description: RVT_N Location: 264794-265037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265082-265727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265082-265727 bp Feature: domain Description: GIIM Note: maturase Location: 265778-266012 bp Feature: domain Description: GIIM Note: maturase Location: 265778-26601 2 bp Feature: domain Description: HNHc Note: nucleases Location: 266228-266390 bp Feature: domain Description: HNHc Note: nucleases Location: 266228-266390 bp Feature: gene Location: 266608-266829 bp Ori: AYC04219.1 Feature: domain Description: DUF2188 Location: 266623-266800 bp Feature: domain Description: DUF21 88 Location: 266623-266800 bp Feature: gene Location: 267156-267716 bp Feature: gene Location: 550478-551944 bp Ori: AYC04480.1 Feature: domain Description: COG3950 Location: 550508-551939 bp Feature: domain Description: COG3950 Location: 550508-551 939 bp Feature: gene Location: 552151-553254 bp Ori: AYC04481.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 552166-552424 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 5521 66-552424 bp Feature: domain Description: YhhI Location: 552583-552850 bp Feature: domain Description: YhhI Location: 552583-552850 bp Feature: domain Description: YhhI Location: 552910-553171 bp Feature: domain Description: YhhI Location: 55291 0-5531 71 bp Feature: gene Location: 553345-554241 bp Ori: AYC04482.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 553408-554005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 553408-554005 bp Feature: gene Location: 554778-555563 bp Ori: AYC04483.1 Feature: domain Description: PRK10621 Location: 554787-555558 bp Feature: domain Description: PRK1 0621 Location: 554787-555558 bp Feature: gene Location: 555493-556353 bp Ori: AYC04484.1 Feature: domain Description: LysR Location: 555499-556327 bp Feature: domain Description: LysR Location: 555499-556327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), COG3950 (Predicted ATP-binding protein involved in virulence ), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)
RVT-Retrons, PRK10621 (hypothetical protein; Provisional), LysR (COG0583)

Seq: CP024083.1 Vibrio cholerae strain FORC_073 chromosome 2, complete sequence (995003 bp)
Overview 1 RT 1: 614357-619266 bp Neighborhood of RT #1 [614357, 619271] PRK00784 RVT-UG7 YdeI Feature: gene Location: 614357-615811 bp Ori: AYC07197.1 Feature: domain Description: PRK00784 Location: 614363-615797 bp Feature: domain Description: PRK00784 Location: 614363-615797 bp Feature: gene Location: 615810-616049 bp Feature: gene Location: 616350-617900 bp Ori: AYC07199.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 616752-617157 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 616752 -617157 bp Feature: gene Location: 618365-618670 bp Feature: gene Location: 618873-619271 bp Ori: AYC07201.1 Feature: domain Description: YdeI Location: 618876-619266 bp Feature: domain Description: YdeI Location: 618876-6192 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00784 (cobyric acid synthase), RVT-UG7, YdeI (COG4430)