myRT

myRT report for GCA_003600625.1_ASM360062v1

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Seq: CP032489.1 Arachidicoccus sp. KIS59-12 chromosome, complete genome (4099663 bp)
Overview 1 RT 1: 265116-272018 bp 2 RT 2: 1024219-1028959 bp 3 RT 3: 1818410-1823686 bp 4 RT 4: 2780911-2783734 bp 5 RT 5: 2980012-2984099 bp 6 RT 6: 3291213-3296677 bp 7 RT 7: 3301515-3306811 bp 8 RT 8: 3511405-3518084 bp 9 RT 9: 4033051-4038032 bp Neighborhood of RT #1 [265116, 272018] LTA_synthase RVT-GII GIIM COG3547 Neighborhood of RT #2 [1024219, 1028964] RVT-GII GIIM PheA2 PRK09276 Neighborhood of RT #3 [1818410, 1823727] RVT-GII GIIM RloB AAA15 Neighborhood of RT #4 [2780911, 2783734] RVT-DGRs Neighborhood of RT #5 [2980012, 2984104] YiiL_rotase YSH1 RVT-GII GIIM YtjA Neighborhood of RT #6 [3291213, 3296709] ruvA RVT-GII GIIM MFS_DtpA_like Neighborhood of RT #7 [3301515, 3306834] FixA COG3547 RVT-GII GIIM YciW Neighborhood of RT #8 [3511405, 3518089] Phage_int_SAM_5 INTN1_C_like Arm-DNA-bind_5 RVT-GII GIIM RVT-GII GIIM SalY Neighborhood of RT #9 [4033051, 4038043] PRK00885 RVT-GII GIIM GapA Feature: gene Location: 265116-267209 bp Ori: AYD46363.1 Feature: domain Description: LTA_synthase Location: 266094-266904 bp Feature: domain Description: LTA_synthase Location: 266094-266904 bp Feature: gene Location: 267617-267862 bp Feature: gene Location: 267859-269292 bp Ori: AYD46365.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268198-268819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2681 98-26881 9 bp Feature: domain Description: GIIM Note: maturase Location: 268876-269083 bp Feature: domain Description: GIIM Note: maturase Location: 268876-269083 bp Feature: gene Location: 269786-270877 bp Ori: AYD46366.1 Feature: domain Description: COG3547 Location: 269975-270836 bp Feature: domain Description: COG3547 Location: 269975-270836 bp Feature: gene Location: 271089-272018 bp Feature: gene Location: 1024219-1024446 bp Feature: gene Location: 1024742-1024987 bp Feature: gene Location: 1024984-1026417 bp Ori: AYD46988.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025323-1025944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 025323-1 025944 bp Feature: domain Description: GIIM Note: maturase Location: 1026001-1026205 bp Feature: domain Description: GIIM Note: maturase Location: 1 026001 -1 026205 bp Feature: gene Location: 1026888-1027739 bp Ori: AYD46989.1 Feature: domain Description: PheA2 Location: 1026918-1027731 bp Feature: domain Description: PheA2 Location: 1 02691 8-1 027731 bp Feature: gene Location: 1027816-1028964 bp Ori: AYD46990.1 Feature: domain Description: PRK09276 Location: 1027822-1028959 bp Feature: domain Description: PRK09276 Location: 1 027822-1 028959 bp Feature: gene Location: 1818410-1819198 bp Feature: gene Location: 1819379-1820134 bp Feature: gene Location: 1820601-1821443 bp Ori: AYD47549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1820625-1820970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 820625-1 820970 bp Feature: domain Description: GIIM Note: maturase Location: 1821027-1821231 bp Feature: domain Description: GIIM Note: maturase Location: 1 821 027-1 821 231 bp Feature: gene Location: 1821687-1822346 bp Ori: AYD47550.1 Feature: domain Description: RloB Location: 1821750-1822326 bp Feature: domain Description: RloB Location: 1 821 750-1 822326 bp Feature: gene Location: 1822357-1823727 bp Ori: AYD47551.1 Feature: domain Description: AAA15 Location: 1822360-1823686 bp Feature: domain Description: AAA1 5 Location: 1 822360-1 823686 bp Feature: gene Location: 2780911-2781348 bp Feature: gene Location: 2781366-2781656 bp Feature: gene Location: 2781643-2782605 bp Ori: AYD48222.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2781847-2782540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2781 847-2782540 bp Feature: gene Location: 2782817-2783215 bp Feature: gene Location: 2783249-2783734 bp Feature: gene Location: 2980012-2980329 bp Ori: AYD48357.1 Gene: rhaM Feature: domain Description: YiiL_rotase Location: 2980024-2980327 bp Feature: domain Description: YiiL_rotase Location: 2980024-2980327 bp Feature: gene Location: 2980453-2981856 bp Ori: AYD48358.1 Feature: domain Description: YSH1 Location: 2980456-2981845 bp Feature: domain Description: YSH1 Location: 2980456-2981 845 bp Feature: gene Location: 2981956-2983389 bp Ori: AYD48359.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982295-2982916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982295-298291 6 bp Feature: domain Description: GIIM Note: maturase Location: 2982973-2983177 bp Feature: domain Description: GIIM Note: maturase Location: 2982973-29831 77 bp Feature: gene Location: 2983386-2983631 bp Feature: gene Location: 2983943-2984104 bp Ori: AYD48361.1 Feature: domain Description: YtjA Location: 2983946-2984099 bp Feature: domain Description: YtjA Location: 2983946-2984099 bp Feature: gene Location: 3291213-3291800 bp Ori: AYD48582.1 Gene: ruvA Feature: domain Description: ruvA Location: 3291216-3291798 bp Feature: domain Description: ruvA Location: 3291 21 6-3291 798 bp Feature: gene Location: 3291850-3293004 bp Feature: gene Location: 3293146-3294579 bp Ori: AYD48584.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293485-3294106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293485-32941 06 bp Feature: domain Description: GIIM Note: maturase Location: 3294163-3294370 bp Feature: domain Description: GIIM Note: maturase Location: 32941 63-3294370 bp Feature: gene Location: 3294576-3294821 bp Feature: gene Location: 3295105-3296709 bp Ori: AYD48586.1 Feature: domain Description: MFS_DtpA_like Location: 3295159-3296677 bp Feature: domain Description: MFS_DtpA_like Location: 32951 59-3296677 bp Feature: gene Location: 3301515-3302258 bp Ori: AYD48592.1 Feature: domain Description: FixA Location: 3301518-3302253 bp Feature: domain Description: FixA Location: 3301 51 8-3302253 bp Feature: gene Location: 3302731-3303822 bp Ori: AYD48593.1 Feature: domain Description: COG3547 Location: 3302920-3303781 bp Feature: domain Description: COG3547 Location: 3302920-3303781 bp Feature: gene Location: 3304316-3305749 bp Ori: AYD48594.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3304655-3305276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3304655-3305276 bp Feature: domain Description: GIIM Note: maturase Location: 3305333-3305540 bp Feature: domain Description: GIIM Note: maturase Location: 3305333-3305540 bp Feature: gene Location: 3305746-3305991 bp Feature: gene Location: 3306382-3306834 bp Ori: AYD48596.1 Feature: domain Description: YciW Location: 3306451-3306811 bp Feature: domain Description: YciW Location: 3306451 -330681 1 bp Feature: gene Location: 3511405-3512049 bp Ori: AYD48741.1 Feature: domain Description: Phage_int_SAM_5 Location: 3511492-3511789 bp Feature: domain Description: Phage_int_SAM_5 Location: 351 1 492-351 1 789 bp Feature: domain Description: INTN1_C_like Location: 3511840-3512029 bp Feature: domain Description: INTN1 _C_like Location: 351 1 840-351 2029 bp Feature: gene Location: 3512083-3512382 bp Ori: AYD48742.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3512197-3512374 bp Feature: domain Description: Arm-DNA-bind_5 Location: 351 21 97-351 2374 bp Feature: gene Location: 3512643-3514076 bp Ori: AYD48743.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3512982-3513603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 2982-351 3603 bp Feature: domain Description: GIIM Note: maturase Location: 3513660-3513867 bp Feature: domain Description: GIIM Note: maturase Location: 351 3660-351 3867 bp Feature: gene Location: 3514073-3514318 bp Feature: gene Location: 3514636-3516069 bp Ori: AYD48745.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3514975-3515596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 4975-351 5596 bp Feature: domain Description: GIIM Note: maturase Location: 3515653-3515860 bp Feature: domain Description: GIIM Note: maturase Location: 351 5653-351 5860 bp Feature: gene Location: 3516066-3516311 bp Feature: gene Location: 3516887-3518089 bp Ori: AYD49460.1 Feature: domain Description: SalY Location: 3516917-3518084 bp Feature: domain Description: SalY Location: 351 691 7-351 8084 bp Feature: gene Location: 4033051-4033275 bp Feature: gene Location: 4033300-4034574 bp Ori: AYD49160.1 Gene: purD Feature: domain Description: PRK00885 Location: 4033303-4034566 bp Feature: domain Description: PRK00885 Location: 4033303-4034566 bp Feature: gene Location: 4034751-4036184 bp Ori: AYD49161.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035090-4035711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035090-403571 1 bp Feature: domain Description: GIIM Note: maturase Location: 4035768-4035975 bp Feature: domain Description: GIIM Note: maturase Location: 4035768-4035975 bp Feature: gene Location: 4036181-4036426 bp Feature: gene Location: 4037033-4038043 bp Ori: AYD49163.1 Gene: gap Feature: domain Description: GapA Location: 4037045-4038032 bp Feature: domain Description: GapA Location: 4037045-4038032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTA_synthase (cd16015), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PheA2 (COG0077), PRK09276 (LL-diaminopimelate aminotransferase; Provisional), RloB (pfam13707), AAA15 (COG1106), RVT-DGRs, YiiL_rotase (TIGR02625)
YSH1 (COG1236), YtjA (COG5487), ruvA (TIGR00084), MFS_DtpA_like (cd17346), FixA (COG2086), YciW (COG2128), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), SalY (COG0577)
PRK00885 (phosphoribosylamine--glycine ligase; Provisional), GapA (COG0057)