myRT

myRT report for GCA_003609755.1_ASM360975v1

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Seq: AP017991.1 Planktothrix agardhii NIES-204 DNA, complete genome (4780238 bp)
Overview 1 RT 1: 798995-805902 bp 2 RT 2: 2457319-2464788 bp 3 RT 3: 3175435-3181273 bp 4 RT 4: 3440202-3447477 bp Neighborhood of RT #1 [798995, 805958] LAGLIDADG_2 NrdF RVT_N RVT-GII GIIM HNHc NrdF ATP-cone RNR_I Neighborhood of RT #2 [2457319, 2465375] TPR TPR CpeT RVT_N RVT-GII GIIM HNHc PLN02572 ABC_SMC1_euk Neighborhood of RT #3 [3175435, 3181428] PLN02770 RVT_N RVT-GII GIIM HNHc Era_like DUF697 Neighborhood of RT #4 [3440202, 3447629] marine_srt_targ lpxB RVT-DGRs Avd_like YfmG Feature: gene Location: 798995-799594 bp Ori: BBD53387.1 Feature: domain Description: LAGLIDADG_2 Location: 799037-799526 bp Feature: domain Description: LAGLIDADG_2 Location: 799037-799526 bp Feature: gene Location: 799809-800093 bp Ori: BBD53388.1 Feature: domain Description: NrdF Location: 799815-800091 bp Feature: domain Description: NrdF Location: 79981 5-800091 bp Feature: gene Location: 800695-802431 bp Ori: BBD53389.1 Feature: domain Description: RVT_N Location: 800734-800980 bp Feature: domain Description: RVT_N Location: 800734-800980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801022-801691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 022-801 691 bp Feature: domain Description: GIIM Note: maturase Location: 801790-801991 bp Feature: domain Description: GIIM Note: maturase Location: 801 790-801 991 bp Feature: domain Description: HNHc Note: nucleases Location: 802210-802360 bp Feature: domain Description: HNHc Note: nucleases Location: 80221 0-802360 bp Feature: gene Location: 803398-803622 bp Ori: BBD53390.1 Feature: domain Description: NrdF Location: 803476-803617 bp Feature: domain Description: NrdF Location: 803476-80361 7 bp Feature: gene Location: 803700-805958 bp Ori: BBD53391.1 Feature: domain Description: ATP-cone Location: 803748-804000 bp Feature: domain Description: ATP-cone Location: 803748-804000 bp Feature: domain Description: RNR_I Location: 804219-805902 bp Feature: domain Description: RNR_I Location: 80421 9-805902 bp Feature: gene Location: 2457319-2458644 bp Ori: BBD54846.1 Feature: domain Description: TPR Location: 2457820-2458189 bp Feature: domain Description: TPR Location: 2457820-24581 89 bp Feature: domain Description: TPR Location: 2458249-2458564 bp Feature: domain Description: TPR Location: 2458249-2458564 bp Feature: gene Location: 2459154-2459744 bp Ori: BBD54847.1 Feature: domain Description: CpeT Location: 2459184-2459712 bp Feature: domain Description: CpeT Location: 24591 84-245971 2 bp Feature: gene Location: 2460425-2462203 bp Ori: BBD54848.1 Feature: domain Description: RVT_N Location: 2460470-2460716 bp Feature: domain Description: RVT_N Location: 2460470-246071 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460824-2461457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460824-2461 457 bp Feature: domain Description: GIIM Note: maturase Location: 2461556-2461757 bp Feature: domain Description: GIIM Note: maturase Location: 2461 556-2461 757 bp Feature: domain Description: HNHc Note: nucleases Location: 2461967-2462126 bp Feature: domain Description: HNHc Note: nucleases Location: 2461 967-24621 26 bp Feature: gene Location: 2462348-2463454 bp Ori: BBD54849.1 Gene: sqdB_1 Feature: domain Description: PLN02572 Location: 2462351-2463446 bp Feature: domain Description: PLN02572 Location: 2462351 -2463446 bp Feature: gene Location: 2463576-2465375 bp Ori: BBD54850.1 Feature: domain Description: ABC_SMC1_euk Location: 2464113-2464788 bp Feature: domain Description: ABC_SMC1 _euk Location: 24641 1 3-2464788 bp Feature: gene Location: 3175435-3176085 bp Ori: BBD55508.1 Feature: domain Description: PLN02770 Location: 3175441-3176062 bp Feature: domain Description: PLN02770 Location: 31 75441 -31 76062 bp Feature: gene Location: 3176219-3176350 bp Feature: gene Location: 3177065-3178834 bp Ori: BBD55510.1 Feature: domain Description: RVT_N Location: 3177107-3177353 bp Feature: domain Description: RVT_N Location: 31 771 07-31 77353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3177461-3178094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 77461 -31 78094 bp Feature: domain Description: GIIM Note: maturase Location: 3178193-3178394 bp Feature: domain Description: GIIM Note: maturase Location: 31 781 93-31 78394 bp Feature: domain Description: HNHc Note: nucleases Location: 3178613-3178763 bp Feature: domain Description: HNHc Note: nucleases Location: 31 7861 3-31 78763 bp Feature: gene Location: 3178890-3179579 bp Feature: gene Location: 3179830-3181428 bp Ori: BBD55512.1 Feature: domain Description: Era_like Location: 3180229-3180709 bp Feature: domain Description: Era_like Location: 31 80229-31 80709 bp Feature: domain Description: DUF697 Location: 3180799-3181273 bp Feature: domain Description: DUF697 Location: 31 80799-31 81 273 bp Feature: gene Location: 3440202-3442709 bp Ori: BBD55729.1 Feature: domain Description: marine_srt_targ Location: 3440445-3442206 bp Feature: domain Description: marine_srt_targ Location: 3440445-3442206 bp Feature: gene Location: 3442985-3444205 bp Ori: BBD55730.1 Gene: lpxB Feature: domain Description: lpxB Location: 3443009-3444176 bp Feature: domain Description: lpxB Location: 3443009-34441 76 bp Feature: gene Location: 3444562-3445656 bp Ori: BBD55731.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3444802-3445510 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3444802-344551 0 bp Feature: gene Location: 3445617-3445967 bp Ori: BBD55732.1 Feature: domain Description: Avd_like Location: 3445635-3445941 bp Feature: domain Description: Avd_like Location: 3445635-3445941 bp Feature: gene Location: 3446664-3447629 bp Ori: BBD55733.1 Feature: domain Description: YfmG Location: 3447246-3447477 bp Feature: domain Description: YfmG Location: 3447246-3447477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LAGLIDADG_2 (pfam03161), NrdF (COG0208), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ATP-cone (pfam03477), RNR_I (cd01679), TPR (smart00028), CpeT (pfam06206)
PLN02572 (UDP-sulfoquinovose synthase), ABC_SMC1_euk (cd03275), PLN02770 (haloacid dehalogenase-like hydrolase family protein), Era_like (cd00880), DUF697 (pfam05128), marine_srt_targ (TIGR03788), lpxB (TIGR00215), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)