myRT

myRT report for GCA_003627755.1_ASM362775v1

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Seq: CP032696.1 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence (550563 bp)
Overview 1 RT 1: 276555-280611 bp 2 RT 2: 289188-291315 bp Neighborhood of RT #1 [276555, 280611] COG3436 RVT-GII PinE Zn_ribbon_recom HTH_17 Neighborhood of RT #2 [289188, 291326] AroE COG3335 RVT-GII GIIM KOG1201 Feature: gene Location: 276555-277063 bp Feature: domain Description: COG3436 Location: 276564-276714 bp Feature: domain Description: COG3436 Location: 276564-27671 4 bp Feature: gene Location: 277126-277444 bp Feature: gene Location: 277577-278014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277793-278012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277793-27801 2 bp Feature: gene Location: 278044-280269 bp Ori: AYG64094.1 Feature: domain Description: PinE Location: 278104-278680 bp Feature: domain Description: PinE Location: 2781 04-278680 bp Feature: domain Description: Zn_ribbon_recom Location: 279052-279223 bp Feature: domain Description: Zn_ribbon_recom Location: 279052-279223 bp Feature: domain Description: HTH_17 Location: 279934-280054 bp Feature: domain Description: HTH_1 7 Location: 279934-280054 bp Feature: gene Location: 280432-280611 bp Feature: gene Location: 289188-289379 bp Ori: AYG64105.1 Feature: domain Description: AroE Location: 289194-289374 bp Feature: domain Description: AroE Location: 2891 94-289374 bp Feature: gene Location: 289554-289733 bp Feature: domain Description: COG3335 Location: 289560-289716 bp Feature: domain Description: COG3335 Location: 289560-28971 6 bp Feature: gene Location: 289826-290275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289832-290021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289832-290021 bp Feature: domain Description: GIIM Note: maturase Location: 290078-290192 bp Feature: domain Description: GIIM Note: maturase Location: 290078-2901 92 bp Feature: gene Location: 290262-291016 bp Feature: gene Location: 291033-291326 bp Feature: domain Description: KOG1201 Location: 291048-291315 bp Feature: domain Description: KOG1 201 Location: 291 048-291 31 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), AroE (COG0169), COG3335 (Transposase ), GIIM (pfam08388), KOG1201 (KOG1201, Hydroxysteroid 17-beta dehydrogenase 11 )

Seq: CP032697.1 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence (314764 bp)
Overview 1 RT 1: 281549-285440 bp 2 RT 2: 289575-295129 bp Neighborhood of RT #1 [281549, 286927] RVT-UG11 PLDc_unchar6 Neighborhood of RT #2 [289575, 295129] DUF4336 PinE RVT-GII PPPi Feature: gene Location: 281549-281827 bp Feature: gene Location: 281805-282161 bp Feature: gene Location: 282238-283086 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 282631-282910 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 82 631-2 82 910 bp Feature: gene Location: 283451-285106 bp Feature: gene Location: 285107-286927 bp Ori: AYG64510.1 Feature: domain Description: PLDc_unchar6 Location: 285128-285440 bp Feature: domain Description: PLDc_unchar6 Location: 2 8512 8-2 85440 bp Feature: gene Location: 289575-290330 bp Ori: AYG64513.1 Feature: domain Description: DUF4336 Location: 289695-290091 bp Feature: domain Description: DUF4336 Location: 2 89695-2 90091 bp Feature: gene Location: 290545-290715 bp Ori: AYG64514.1 Feature: domain Description: PinE Location: 290551-290701 bp Feature: domain Description: PinE Location: 2 90551-2 90701 bp Feature: gene Location: 290797-292620 bp Ori: AYG64515.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291535-292225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 91535-2 92 2 2 5 bp Feature: gene Location: 292801-294252 bp Ori: AYG64516.1 Feature: domain Description: PPPi Location: 292804-294205 bp Feature: domain Description: PPPi Location: 2 92 804-2 942 05 bp Feature: gene Location: 294737-295129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, PLDc_unchar6 (cd09176), DUF4336 (pfam14234), PinE (COG1961), RVT-GII, PPPi (COG3025)

Seq: CP032694.1 Rhizobium jaguaris strain CCGE525 chromosome, complete genome (4575315 bp)
Overview 1 RT 1: 2744730-2748570 bp 2 RT 2: 3922470-3926601 bp Neighborhood of RT #1 [2744730, 2748570] SR_Res_par RVT-UNC HTH_XRE Neighborhood of RT #2 [3922470, 3926648] Flp RVT-GII PRK08999 Acetyltransf_1 Feature: gene Location: 2744730-2745356 bp Ori: AYG59684.1 Feature: domain Description: SR_Res_par Location: 2744739-2745171 bp Feature: domain Description: SR_Res_par Location: 274473 9-2745171 bp Feature: gene Location: 2745432-2746100 bp Feature: gene Location: 2746140-2747462 bp Ori: AYG59685.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2746593-2747067 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2746593 -2747067 bp Feature: gene Location: 2747806-2748066 bp Ori: AYG59686.1 Feature: domain Description: HTH_XRE Location: 2747839-2748001 bp Feature: domain Description: HTH_XRE Location: 274783 9-2748001 bp Feature: gene Location: 2748190-2748570 bp Feature: gene Location: 3922470-3922649 bp Ori: AYG60684.1 Feature: domain Description: Flp Location: 3922476-3922635 bp Feature: domain Description: Flp Location: 3 922476-3 92263 5 bp Feature: gene Location: 3922831-3923145 bp Feature: gene Location: 3923514-3924989 bp Ori: AYG60686.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3923922-3924612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 923 922-3 924612 bp Feature: gene Location: 3925429-3925842 bp Ori: AYG60687.1 Gene: mutT Feature: domain Description: PRK08999 Location: 3925450-3925828 bp Feature: domain Description: PRK08999 Location: 3 925450-3 925828 bp Feature: gene Location: 3925839-3926648 bp Ori: AYG60688.1 Feature: domain Description: Acetyltransf_1 Location: 3926349-3926601 bp Feature: domain Description: Acetyltransf_1 Location: 3 9263 49-3 926601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), RVT-UG11/RVT-CRISPR/RVT-DGRs(RVT-UNC), HTH_XRE (smart00530), Flp (COG3847), RVT-GII, PRK08999 (Nudix family hydrolase), Acetyltransf_1 (pfam00583)

Seq: CP032695.1 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence (2584926 bp)
Overview 1 RT 1: 959944-964130 bp Neighborhood of RT #1 [959944, 964264] MarR RVT-GII HipA_C rve_3 Feature: gene Location: 959944-960974 bp Feature: gene Location: 961113-961595 bp Ori: AYG62389.1 Feature: domain Description: MarR Location: 961242-961563 bp Feature: domain Description: MarR Location: 96124 2-961563 bp Feature: gene Location: 962039-963514 bp Ori: AYG62390.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962447-963137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9624 4 7-963137 bp Feature: gene Location: 963625-963930 bp Feature: domain Description: HipA_C Location: 963628-963928 bp Feature: domain Description: HipA_C Location: 963628-963928 bp Feature: gene Location: 963947-964264 bp Feature: domain Description: rve_3 Location: 963950-964130 bp Feature: domain Description: rve_3 Location: 963950-964 130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), RVT-GII, HipA_C (pfam07804), rve_3 (pfam13683)