myRT

myRT report for GCA_003627775.1_ASM362777v1

Download annotations/find similar RTs

Seq: CP032689.1 Rhizobium sp. CCGE532 chromosome, complete genome (3907717 bp)
Overview 1 RT 1: 3244694-3250178 bp Neighborhood of RT #1 [3244694, 3250198] MurA RVT-UG17 SLATT_5 ddl Feature: gene Location: 3244694-3245986 bp Ori: AYG73837.1 Gene: murA Feature: domain Description: MurA Location: 3244697-3245981 bp Feature: domain Description: MurA Location: 3244697-3245981 bp Feature: gene Location: 3246163-3246357 bp Feature: gene Location: 3246792-3248114 bp Ori: AYG73838.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3247020-3247608 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3247020-3247608 bp Feature: gene Location: 3248115-3248702 bp Ori: AYG74682.1 Feature: domain Description: SLATT_5 Location: 3248130-3248673 bp Feature: domain Description: SLATT_5 Location: 32481 30-3248673 bp Feature: gene Location: 3249134-3250198 bp Ori: AYG73839.1 Feature: domain Description: ddl Location: 3249137-3250178 bp Feature: domain Description: ddl Location: 32491 37-32501 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurA (COG0766), RVT-UG17, SLATT_5 (pfam18160), ddl (PRK01966)

Seq: CP032692.1 Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence (506160 bp)
Overview 1 RT 1: 2817-6902 bp 2 RT 2: 89378-94723 bp 3 RT 3: 162878-169616 bp 4 RT 4: 286737-291459 bp Neighborhood of RT #1 [2817, 6902] DDE_Tnp_IS66 RVT-GII Neighborhood of RT #2 [89378, 94758] DDE_5 DUF4096 RVT-GII GIIM DDE_Tnp_1 MhpC Neighborhood of RT #3 [162878, 169615] GntR RVT-GII COG5659 RVT-GII DUF433 Neighborhood of RT #4 [286737, 291998] PhoB DDE_Tnp_1 RVT-GII GIIM DUF4096 DDE_5 Feature: gene Location: 2817-3143 bp Feature: gene Location: 3306-3781 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3375-3606 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3375-3606 bp Feature: gene Location: 4114-5183 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318-4414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318-4414 bp Feature: gene Location: 5179-5901 bp Feature: gene Location: 5973-6902 bp Feature: gene Location: 89378-90760 bp Ori: AYG76731.1 Feature: domain Description: DDE_5 Location: 89483-90221 bp Feature: domain Description: DDE_5 Location: 89483-902 2 1 bp Feature: gene Location: 90857-91266 bp Feature: domain Description: DUF4096 Location: 90923-91139 bp Feature: domain Description: DUF4096 Location: 9092 3-91139 bp Feature: gene Location: 91750-93078 bp Ori: AYG76732.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92044-92701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 044-92 701 bp Feature: domain Description: GIIM Note: maturase Location: 92770-92983 bp Feature: domain Description: GIIM Note: maturase Location: 92 770-92 983 bp Feature: gene Location: 93196-93612 bp Feature: domain Description: DDE_Tnp_1 Location: 93202-93571 bp Feature: domain Description: DDE_Tnp_1 Location: 932 02 -93571 bp Feature: gene Location: 93898-94758 bp Ori: AYG76733.1 Feature: domain Description: MhpC Location: 93976-94723 bp Feature: domain Description: MhpC Location: 93976-9472 3 bp Feature: gene Location: 162878-163594 bp Ori: AYG76785.1 Feature: domain Description: GntR Location: 162950-163184 bp Feature: domain Description: GntR Location: 162 950-163184 bp Feature: gene Location: 163910-164245 bp Feature: gene Location: 164245-165720 bp Ori: AYG76787.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164653-165343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164653-165343 bp Feature: gene Location: 165846-166994 bp Feature: domain Description: COG5659 Location: 165867-166995 bp Feature: domain Description: COG5659 Location: 165867-166995 bp Feature: gene Location: 167258-168733 bp Ori: AYG76788.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167666-168356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167666-168356 bp Feature: gene Location: 168733-169068 bp Feature: gene Location: 169109-169615 bp Feature: domain Description: DUF433 Location: 169493-169616 bp Feature: domain Description: DUF433 Location: 169493-169616 bp Feature: gene Location: 286737-287459 bp Ori: AYG76869.1 Feature: domain Description: PhoB Location: 286851-287442 bp Feature: domain Description: PhoB Location: 2 86851-2 87442 bp Feature: gene Location: 287598-288014 bp Feature: domain Description: DDE_Tnp_1 Location: 287604-287973 bp Feature: domain Description: DDE_Tnp_1 Location: 2 87604-2 87973 bp Feature: gene Location: 288132-289460 bp Ori: AYG76870.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288426-289083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8842 6-2 89083 bp Feature: domain Description: GIIM Note: maturase Location: 289152-289365 bp Feature: domain Description: GIIM Note: maturase Location: 2 89152 -2 89365 bp Feature: gene Location: 289944-290354 bp Feature: domain Description: DUF4096 Location: 290010-290226 bp Feature: domain Description: DUF4096 Location: 2 90010-2 902 2 6 bp Feature: gene Location: 290616-291998 bp Ori: AYG76871.1 Feature: domain Description: DDE_5 Location: 290721-291459 bp Feature: domain Description: DDE_5 Location: 2 9072 1-2 91459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, DDE_5 (pfam13546), DUF4096 (pfam13340), GIIM (pfam08388), DDE_Tnp_1 (pfam01609), MhpC (COG0596), GntR (pfam00392), COG5659 (SRSO17 transposase ), DUF433 (pfam04255)
PhoB (TIGR02154)