myRT

myRT report for GCA_003627795.1_ASM362779v1

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Seq: CP032684.1 Rhizobium sp. CCGE531 chromosome, complete genome (4041163 bp)
Overview 1 RT 1: 3373137-3378621 bp Neighborhood of RT #1 [3373137, 3378641] MurA RVT-UG17 SLATT_5 ddl Feature: gene Location: 3373137-3374429 bp Ori: AYG67443.1 Gene: murA Feature: domain Description: MurA Location: 3373140-3374424 bp Feature: domain Description: MurA Location: 33731 40-3374424 bp Feature: gene Location: 3374606-3374800 bp Feature: gene Location: 3375235-3376557 bp Ori: AYG67444.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3375463-3376051 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3375463-3376051 bp Feature: gene Location: 3376558-3377145 bp Ori: AYG68297.1 Feature: domain Description: SLATT_5 Location: 3376573-3377116 bp Feature: domain Description: SLATT_5 Location: 3376573-33771 1 6 bp Feature: gene Location: 3377577-3378641 bp Ori: AYG67445.1 Feature: domain Description: ddl Location: 3377580-3378621 bp Feature: domain Description: ddl Location: 3377580-3378621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurA (COG0766), RVT-UG17, SLATT_5 (pfam18160), ddl (PRK01966)

Seq: CP032687.1 Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence (577596 bp)
Overview 1 RT 1: 100308-104413 bp 2 RT 2: 310285-315796 bp 3 RT 3: 378928-383827 bp Neighborhood of RT #1 [100308, 104413] DUF4096 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #2 [310285, 315951] TnpB_IS66 RVT_N RVT-GII GIIM Cupin_8 Neighborhood of RT #3 [378928, 383892] CccA COG3293 COG3293 RVT-GII GIIM AccC Feature: gene Location: 100308-100568 bp Feature: gene Location: 101310-101720 bp Feature: domain Description: DUF4096 Location: 101376-101592 bp Feature: domain Description: DUF4096 Location: 101376-101592 bp Feature: gene Location: 102204-103532 bp Ori: AYG70350.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102498-103155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 498-103155 bp Feature: domain Description: GIIM Note: maturase Location: 103224-103437 bp Feature: domain Description: GIIM Note: maturase Location: 1032 2 4-103437 bp Feature: gene Location: 103650-104066 bp Feature: domain Description: DDE_Tnp_1 Location: 103656-104025 bp Feature: domain Description: DDE_Tnp_1 Location: 103656-10402 5 bp Feature: gene Location: 104190-104413 bp Feature: gene Location: 310285-310638 bp Ori: AYG70511.1 Feature: domain Description: TnpB_IS66 Location: 310318-310609 bp Feature: domain Description: TnpB_IS66 Location: 310318-310609 bp Feature: gene Location: 310684-310953 bp Feature: gene Location: 311596-313137 bp Ori: AYG70512.1 Gene: ltrA Feature: domain Description: RVT_N Location: 311647-311872 bp Feature: domain Description: RVT_N Location: 311647-311872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311935-312571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311935-312 571 bp Feature: domain Description: GIIM Note: maturase Location: 312622-312856 bp Feature: domain Description: GIIM Note: maturase Location: 312 62 2 -312 856 bp Feature: gene Location: 313133-314615 bp Feature: gene Location: 315082-315951 bp Ori: AYG70752.1 Feature: domain Description: Cupin_8 Location: 315109-315796 bp Feature: domain Description: Cupin_8 Location: 315109-315796 bp Feature: gene Location: 378928-379329 bp Ori: AYG70556.1 Feature: domain Description: CccA Location: 379036-379327 bp Feature: domain Description: CccA Location: 379036-37932 7 bp Feature: gene Location: 379399-380160 bp Feature: domain Description: COG3293 Location: 379411-379738 bp Feature: domain Description: COG32 93 Location: 379411-379738 bp Feature: domain Description: COG3293 Location: 380005-380152 bp Feature: domain Description: COG32 93 Location: 380005-380152 bp Feature: gene Location: 380834-382084 bp Ori: AYG70557.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381050-381695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381050-381695 bp Feature: domain Description: GIIM Note: maturase Location: 381782-381992 bp Feature: domain Description: GIIM Note: maturase Location: 381782 -381992 bp Feature: gene Location: 382136-382369 bp Feature: gene Location: 382603-383892 bp Ori: AYG70559.1 Feature: domain Description: AccC Location: 382621-383827 bp Feature: domain Description: AccC Location: 382 62 1-38382 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), TnpB_IS66 (pfam05717), RVT_N (pfam13655), Cupin_8 (pfam13621), CccA (COG2010), COG3293 (Transposase ), AccC (COG0439)