myRT

myRT report for GCA_003671915.1_ASM367191v1

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Seq: CP032153.1 Alcaligenes aquatilis strain QD168 chromosome, complete genome (4323879 bp)
Overview 1 RT 1: 462098-470354 bp 2 RT 2: 1689567-1695411 bp 3 RT 3: 3146574-3151001 bp 4 RT 4: 3599659-3604777 bp 5 RT 5: 4169489-4175335 bp Neighborhood of RT #1 [462098, 470422] YeeA RVT-UG5 YeeA COG2865 Neighborhood of RT #2 [1689567, 1695419] GntT RVT-Retrons ABC_ATPase int Neighborhood of RT #3 [3146574, 3151001] Avd_like RVT-DGRs Dcm Neighborhood of RT #4 [3599659, 3604800] rve_3 DNA_BRE_C RVT-GII GIIM PRK06958 FIN Neighborhood of RT #5 [4169489, 4175358] MFS_MJ1317_like RVT-GII GIIM PRK06958 MFS_YajR_like Feature: gene Location: 462098-463918 bp Ori: AYN19427.1 Gene: pglX Feature: domain Description: YeeA Location: 462680-463685 bp Feature: domain Description: YeeA Location: 462680-463685 bp Feature: gene Location: 463915-464133 bp Feature: gene Location: 464126-467137 bp Ori: AYN19429.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 464621-465092 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 464621 -465092 bp Feature: gene Location: 467140-468927 bp Ori: AYN19430.1 Gene: pglX Feature: domain Description: YeeA Location: 467827-468697 bp Feature: domain Description: YeeA Location: 467827-468697 bp Feature: gene Location: 468929-470422 bp Ori: AYN19431.1 Feature: domain Description: COG2865 Location: 468932-470354 bp Feature: domain Description: COG2865 Location: 468932-470354 bp Feature: gene Location: 1689567-1689839 bp Feature: gene Location: 1690002-1691405 bp Ori: AYN20411.1 Feature: domain Description: GntT Location: 1690014-1691391 bp Feature: domain Description: GntT Location: 1 69001 4-1 691 391 bp Feature: gene Location: 1692215-1693171 bp Ori: AYN20412.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1692329-1692878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 692329-1 692878 bp Feature: gene Location: 1693168-1694505 bp Ori: AYN20413.1 Feature: domain Description: ABC_ATPase Location: 1693222-1693924 bp Feature: domain Description: ABC_ATPase Location: 1 693222-1 693924 bp Feature: gene Location: 1694538-1695419 bp Ori: AYN20414.1 Feature: domain Description: int Location: 1694589-1695411 bp Feature: domain Description: int Location: 1 694589-1 69541 1 bp Feature: gene Location: 3146574-3147032 bp Feature: gene Location: 3147053-3147412 bp Ori: AYN21620.1 Feature: domain Description: Avd_like Location: 3147080-3147386 bp Feature: domain Description: Avd_like Location: 31 47080-31 47386 bp Feature: gene Location: 3147420-3148781 bp Ori: AYN22821.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3147852-3148542 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 47852-31 48542 bp Feature: gene Location: 3148820-3150511 bp Ori: AYN21621.1 Feature: domain Description: Dcm Location: 3148865-3150467 bp Feature: domain Description: Dcm Location: 31 48865-31 50467 bp Feature: gene Location: 3150720-3151001 bp Feature: gene Location: 3599659-3599829 bp Feature: domain Description: rve_3 Location: 3599662-3599830 bp Feature: domain Description: rve_3 Location: 3599662-3599830 bp Feature: gene Location: 3600096-3601064 bp Ori: AYN21992.1 Feature: domain Description: DNA_BRE_C Location: 3600768-3601038 bp Feature: domain Description: DNA_BRE_C Location: 3600768-3601 038 bp Feature: gene Location: 3601305-3602642 bp Ori: AYN21993.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3601608-3602241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3601 608-3602241 bp Feature: domain Description: GIIM Note: maturase Location: 3602313-3602535 bp Feature: domain Description: GIIM Note: maturase Location: 360231 3-3602535 bp Feature: gene Location: 3603201-3603689 bp Ori: AYN21994.1 Gene: ssb Feature: domain Description: PRK06958 Location: 3603204-3603588 bp Feature: domain Description: PRK06958 Location: 3603204-3603588 bp Feature: gene Location: 3604270-3604800 bp Ori: AYN21995.1 Feature: domain Description: FIN Location: 3604438-3604777 bp Feature: domain Description: FIN Location: 3604438-3604777 bp Feature: gene Location: 4169489-4170022 bp Feature: gene Location: 4169997-4171232 bp Ori: AYN22483.1 Feature: domain Description: MFS_MJ1317_like Location: 4170078-4171197 bp Feature: domain Description: MFS_MJ1 31 7_like Location: 41 70078-41 71 1 97 bp Feature: gene Location: 4171467-4172804 bp Ori: AYN22484.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4171770-4172403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 71 770-41 72403 bp Feature: domain Description: GIIM Note: maturase Location: 4172475-4172697 bp Feature: domain Description: GIIM Note: maturase Location: 41 72475-41 72697 bp Feature: gene Location: 4173363-4173887 bp Ori: AYN22485.1 Gene: ssb Feature: domain Description: PRK06958 Location: 4173366-4173885 bp Feature: domain Description: PRK06958 Location: 41 73366-41 73885 bp Feature: gene Location: 4174147-4175358 bp Ori: AYN22486.1 Feature: domain Description: MFS_YajR_like Location: 4174237-4175335 bp Feature: domain Description: MFS_YajR_like Location: 41 74237-41 75335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeA (COG1002), RVT-UG5, COG2865 (Predicted transcriptional regulator, contains HTH domain ), GntT (COG2610), RVT-Retrons, ABC_ATPase (pfam09818), int (PHA02601), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)
rve_3 (pfam13683), DNA_BRE_C (cl00213), RVT-GII, GIIM (pfam08388), PRK06958 (single-stranded DNA-binding protein; Provisional), FIN (cd16389), MFS_MJ1317_like (cd17370), MFS_YajR_like (cd17472)