myRT

myRT report for GCA_003671955.1_ASM367195v1

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Seq: CP022561.1 Pseudomonas putida strain B4 chromosome, complete genome (6011680 bp)
Overview 1 RT 1: 93125-99542 bp 2 RT 2: 292200-298929 bp 3 RT 3: 1602214-1608644 bp 4 RT 4: 2268430-2277145 bp 5 RT 5: 3213500-3215499 bp 6 RT 6: 4441457-4447792 bp 7 RT 7: 4981171-4985540 bp Neighborhood of RT #1 [93125, 99580] Ivy gltP RVT-GII GIIM SpmA SpmB COG3218 Neighborhood of RT #2 [292200, 299087] GGDEF PRK14975 RVT-UG9 Integrase_1 Neighborhood of RT #3 [1602214, 1608790] PRK06635 PRK01712 RVT-GII GIIM MgtE Arc Neighborhood of RT #4 [2268430, 2277153] CytC galU RVT-GII GIIM RVT-GII GIIM PRK06116 PBP2_phosphate_like_1 OmpA_C-like Neighborhood of RT #5 [3213500, 3215591] Tsi6 RVT-GII Ntox46 Neighborhood of RT #6 [4441457, 4447800] TonB-siderophor RVT-GII GIIM PRK06213 KOG2848 Neighborhood of RT #7 [4981171, 4985545] InsE RVT-GII GIIM groEL groES Feature: gene Location: 93125-93595 bp Ori: AYN08392.1 Feature: domain Description: Ivy Location: 93236-93587 bp Feature: domain Description: Ivy Location: 93236-93587 bp Feature: gene Location: 94339-95667 bp Ori: AYN08393.1 Feature: domain Description: gltP Location: 94342-95632 bp Feature: domain Description: gltP Location: 94342-95632 bp Feature: gene Location: 96143-97564 bp Ori: AYN08394.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96500-97115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96500-971 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 97172-97397 bp Feature: domain Description: GIIM Note: maturase Location: 971 72-97397 bp Feature: gene Location: 97734-98963 bp Ori: AYN08395.1 Feature: domain Description: SpmA Location: 97737-98373 bp Feature: domain Description: SpmA Location: 97737-98373 bp Feature: domain Description: SpmB Location: 98478-98958 bp Feature: domain Description: SpmB Location: 98478-98958 bp Feature: gene Location: 98945-99580 bp Ori: AYN08396.1 Feature: domain Description: COG3218 Location: 98960-99542 bp Feature: domain Description: COG321 8 Location: 98960-99542 bp Feature: gene Location: 292200-293810 bp Ori: AYN08535.1 Feature: domain Description: GGDEF Location: 293313-293793 bp Feature: domain Description: GGDEF Location: 29331 3-293793 bp Feature: gene Location: 294122-295687 bp Ori: AYN08536.1 Feature: domain Description: PRK14975 Location: 294893-295610 bp Feature: domain Description: PRK1 4975 Location: 294893-29561 0 bp Feature: gene Location: 295680-297029 bp Ori: AYN13458.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 295683-296238 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 295683-296238 bp Feature: gene Location: 297834-298110 bp Feature: gene Location: 298107-299087 bp Feature: domain Description: Integrase_1 Location: 298491-298929 bp Feature: domain Description: Integrase_1 Location: 298491 -298929 bp Feature: gene Location: 1602214-1603449 bp Ori: AYN09694.1 Feature: domain Description: PRK06635 Location: 1602217-1603426 bp Feature: domain Description: PRK06635 Location: 1 60221 7-1 603426 bp Feature: gene Location: 1603616-1603804 bp Ori: AYN09695.1 Gene: csrA Feature: domain Description: PRK01712 Location: 1603619-1603790 bp Feature: domain Description: PRK01 71 2 Location: 1 60361 9-1 603790 bp Feature: gene Location: 1605068-1606489 bp Ori: AYN09696.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605425-1606040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 605425-1 606040 bp Feature: domain Description: GIIM Note: maturase Location: 1606097-1606322 bp Feature: domain Description: GIIM Note: maturase Location: 1 606097-1 606322 bp Feature: gene Location: 1606915-1608357 bp Ori: AYN09697.1 Gene: mgtE Feature: domain Description: MgtE Location: 1607044-1608352 bp Feature: domain Description: MgtE Location: 1 607044-1 608352 bp Feature: gene Location: 1608464-1608790 bp Ori: AYN09698.1 Feature: domain Description: Arc Location: 1608497-1608644 bp Feature: domain Description: Arc Location: 1 608497-1 608644 bp Feature: gene Location: 2268430-2269344 bp Ori: AYN10244.1 Feature: domain Description: CytC Location: 2268493-2269330 bp Feature: domain Description: CytC Location: 2268493-2269330 bp Feature: gene Location: 2269581-2270420 bp Ori: AYN10245.1 Gene: galU Feature: domain Description: galU Location: 2269590-2270373 bp Feature: domain Description: galU Location: 2269590-2270373 bp Feature: gene Location: 2270894-2272315 bp Ori: AYN10246.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2271251-2271866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2271 251 -2271 866 bp Feature: domain Description: GIIM Note: maturase Location: 2271923-2272148 bp Feature: domain Description: GIIM Note: maturase Location: 2271 923-22721 48 bp Feature: gene Location: 2272813-2274234 bp Ori: AYN10247.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273170-2273785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22731 70-2273785 bp Feature: domain Description: GIIM Note: maturase Location: 2273842-2274067 bp Feature: domain Description: GIIM Note: maturase Location: 2273842-2274067 bp Feature: gene Location: 2274356-2275711 bp Ori: AYN10248.1 Feature: domain Description: PRK06116 Location: 2274359-2275697 bp Feature: domain Description: PRK061 1 6 Location: 2274359-2275697 bp Feature: gene Location: 2275846-2277153 bp Ori: AYN10249.1 Feature: domain Description: PBP2_phosphate_like_1 Location: 2275915-2276737 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 227591 5-2276737 bp Feature: domain Description: OmpA_C-like Location: 2276836-2277145 bp Feature: domain Description: OmpA_C-like Location: 2276836-22771 45 bp Feature: gene Location: 3213500-3213796 bp Ori: AYN11048.1 Feature: domain Description: Tsi6 Location: 3213515-3213761 bp Feature: domain Description: Tsi6 Location: 321 351 5-321 3761 bp Feature: gene Location: 3213886-3214311 bp Feature: gene Location: 3214257-3214646 bp Ori: AYN11050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3214263-3214482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 4263-321 4482 bp Feature: gene Location: 3215056-3215367 bp Feature: gene Location: 3215394-3215591 bp Ori: AYN11052.1 Feature: domain Description: Ntox46 Location: 3215418-3215499 bp Feature: domain Description: Ntox46 Location: 321 541 8-321 5499 bp Feature: gene Location: 4441457-4441678 bp Feature: gene Location: 4441677-4443809 bp Ori: AYN12086.1 Feature: domain Description: TonB-siderophor Location: 4441866-4443807 bp Feature: domain Description: TonB-siderophor Location: 4441 866-4443807 bp Feature: gene Location: 4444094-4445515 bp Ori: AYN12087.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4444451-4445066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4444451 -4445066 bp Feature: domain Description: GIIM Note: maturase Location: 4445123-4445348 bp Feature: domain Description: GIIM Note: maturase Location: 44451 23-4445348 bp Feature: gene Location: 4446277-4446966 bp Ori: AYN12088.1 Feature: domain Description: PRK06213 Location: 4446280-4446964 bp Feature: domain Description: PRK0621 3 Location: 4446280-4446964 bp Feature: gene Location: 4447087-4447800 bp Ori: AYN12089.1 Feature: domain Description: KOG2848 Location: 4447102-4447792 bp Feature: domain Description: KOG2848 Location: 44471 02-4447792 bp Feature: gene Location: 4981171-4981519 bp Ori: AYN12573.1 Feature: domain Description: InsE Location: 4981189-4981459 bp Feature: domain Description: InsE Location: 4981 1 89-4981 459 bp Feature: gene Location: 4980300-4981171 bp Feature: gene Location: 4981652-4983073 bp Ori: AYN12574.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4982009-4982624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4982009-4982624 bp Feature: domain Description: GIIM Note: maturase Location: 4982681-4982906 bp Feature: domain Description: GIIM Note: maturase Location: 4982681 -4982906 bp Feature: gene Location: 4983561-4985201 bp Ori: AYN12575.1 Gene: groL Feature: domain Description: groEL Location: 4983567-4985184 bp Feature: domain Description: groEL Location: 4983567-49851 84 bp Feature: gene Location: 4985252-4985545 bp Ori: AYN12576.1 Feature: domain Description: groES Location: 4985255-4985540 bp Feature: domain Description: groES Location: 4985255-4985540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ivy (pfam08816), gltP (PRK11283), RVT-GII, GIIM (pfam08388), SpmA (COG2715), SpmB (COG0700), COG3218 (ABC-type uncharacterized transport system, auxiliary component ), GGDEF (TIGR00254), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9
Integrase_1 (pfam12835), PRK06635 (aspartate kinase; Reviewed), PRK01712 (carbon storage regulator CsrA), MgtE (pfam01769), Arc (pfam03869), CytC (COG3258), galU (TIGR01099), PRK06116 (glutathione reductase; Validated), PBP2_phosphate_like_1 (cd13653), OmpA_C-like (cl30079)
Tsi6 (pfam18660), Ntox46 (pfam15538), TonB-siderophor (TIGR01783), PRK06213 (crotonase/enoyl-CoA hydratase family protein), KOG2848 (KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase ), InsE (COG2963), groEL (PRK12852), groES (PRK14533)